Experiment: Def Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2113 and Psest_2114 are separated by 92 nucleotides Psest_2114 and Psest_2115 are separated by 114 nucleotides
Psest_2113: Psest_2113 - undecaprenyl-diphosphatase UppP, at 2,242,652 to 2,243,482
_2113
Psest_2114: Psest_2114 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 2,243,575 to 2,244,534
_2114
Psest_2115: Psest_2115 - ATPase components of ABC transporters with duplicated ATPase domains, at 2,244,649 to 2,246,238
_2115
Position (kb)
2243
2244
2245 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2243.632 kb on + strand at 2243.632 kb on + strand at 2243.803 kb on + strand, within Psest_2114 at 2244.031 kb on + strand, within Psest_2114 at 2244.031 kb on + strand, within Psest_2114 at 2244.031 kb on + strand, within Psest_2114 at 2244.031 kb on + strand, within Psest_2114 at 2244.031 kb on + strand, within Psest_2114 at 2244.031 kb on + strand, within Psest_2114 at 2244.031 kb on + strand, within Psest_2114 at 2244.031 kb on + strand, within Psest_2114 at 2244.031 kb on + strand, within Psest_2114 at 2244.032 kb on - strand, within Psest_2114 at 2244.032 kb on - strand, within Psest_2114 at 2244.040 kb on + strand, within Psest_2114 at 2244.040 kb on + strand, within Psest_2114 at 2244.112 kb on + strand, within Psest_2114 at 2244.112 kb on + strand, within Psest_2114 at 2244.113 kb on - strand, within Psest_2114 at 2244.113 kb on - strand, within Psest_2114 at 2244.113 kb on - strand, within Psest_2114 at 2244.207 kb on + strand, within Psest_2114 at 2244.230 kb on - strand, within Psest_2114 at 2244.391 kb on + strand, within Psest_2114 at 2244.392 kb on - strand, within Psest_2114 at 2244.678 kb on - strand at 2244.678 kb on - strand at 2244.686 kb on + strand at 2244.687 kb on - strand at 2245.079 kb on + strand, within Psest_2115 at 2245.080 kb on - strand, within Psest_2115 at 2245.520 kb on + strand, within Psest_2115 at 2245.520 kb on + strand, within Psest_2115 at 2245.520 kb on + strand, within Psest_2115 at 2245.520 kb on + strand, within Psest_2115 at 2245.520 kb on + strand, within Psest_2115 at 2245.520 kb on + strand, within Psest_2115 at 2245.520 kb on + strand, within Psest_2115 at 2245.520 kb on + strand, within Psest_2115 at 2245.521 kb on - strand, within Psest_2115 at 2245.521 kb on - strand, within Psest_2115 at 2245.521 kb on - strand, within Psest_2115 at 2245.521 kb on - strand, within Psest_2115 at 2245.521 kb on - strand, within Psest_2115 at 2245.521 kb on - strand, within Psest_2115 at 2245.529 kb on + strand, within Psest_2115 at 2245.529 kb on + strand, within Psest_2115 at 2245.530 kb on - strand, within Psest_2115 at 2245.530 kb on - strand, within Psest_2115
Per-strain Table
Position Strand Gene LocusTag Fraction Def Vancomycin 0.016 mg/ml remove 2,242,600 + -1.3 2,242,600 + -0.2 2,242,600 + +0.1 2,242,600 + -0.7 2,242,600 + +0.2 2,242,600 + +0.2 2,242,600 + +0.2 2,242,600 + +0.4 2,242,602 + -1.9 2,242,602 + -3.4 2,242,602 + -0.1 2,242,602 + -1.0 2,242,602 + -0.6 2,242,602 + -0.0 2,242,602 + -0.7 2,242,602 + -2.4 2,242,602 + -2.8 2,242,602 + +0.9 2,242,602 + +0.2 2,243,632 + -1.0 2,243,632 + -1.6 2,243,803 + Psest_2114 0.24 -1.4 2,244,031 + Psest_2114 0.47 -0.9 2,244,031 + Psest_2114 0.47 +0.7 2,244,031 + Psest_2114 0.47 -0.0 2,244,031 + Psest_2114 0.47 +1.0 2,244,031 + Psest_2114 0.47 -2.0 2,244,031 + Psest_2114 0.47 +0.6 2,244,031 + Psest_2114 0.47 -0.2 2,244,031 + Psest_2114 0.47 -3.2 2,244,031 + Psest_2114 0.47 -1.2 2,244,032 - Psest_2114 0.48 -1.5 2,244,032 - Psest_2114 0.48 -0.9 2,244,040 + Psest_2114 0.48 +0.6 2,244,040 + Psest_2114 0.48 +1.1 2,244,112 + Psest_2114 0.56 -2.3 2,244,112 + Psest_2114 0.56 -1.9 2,244,113 - Psest_2114 0.56 +0.6 2,244,113 - Psest_2114 0.56 -0.5 2,244,113 - Psest_2114 0.56 -1.2 2,244,207 + Psest_2114 0.66 +0.4 2,244,230 - Psest_2114 0.68 -0.4 2,244,391 + Psest_2114 0.85 -0.0 2,244,392 - Psest_2114 0.85 -0.4 2,244,678 - -0.2 2,244,678 - +1.2 2,244,686 + -0.3 2,244,687 - +0.4 2,245,079 + Psest_2115 0.27 -0.8 2,245,080 - Psest_2115 0.27 +0.9 2,245,520 + Psest_2115 0.55 +1.1 2,245,520 + Psest_2115 0.55 -0.4 2,245,520 + Psest_2115 0.55 +0.2 2,245,520 + Psest_2115 0.55 -1.2 2,245,520 + Psest_2115 0.55 -0.4 2,245,520 + Psest_2115 0.55 -0.4 2,245,520 + Psest_2115 0.55 -0.1 2,245,520 + Psest_2115 0.55 +1.0 2,245,521 - Psest_2115 0.55 +0.3 2,245,521 - Psest_2115 0.55 -0.2 2,245,521 - Psest_2115 0.55 -0.4 2,245,521 - Psest_2115 0.55 +0.4 2,245,521 - Psest_2115 0.55 +0.8 2,245,521 - Psest_2115 0.55 -1.4 2,245,529 + Psest_2115 0.55 +0.6 2,245,529 + Psest_2115 0.55 -1.1 2,245,530 - Psest_2115 0.55 +1.6 2,245,530 - Psest_2115 0.55 -0.0
Or see this region's nucleotide sequence