Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1692

Experiment: Def Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1690 and Psest_1691 overlap by 4 nucleotidesPsest_1691 and Psest_1692 overlap by 4 nucleotidesPsest_1692 and Psest_1693 overlap by 4 nucleotidesPsest_1693 and Psest_1694 overlap by 8 nucleotides Psest_1690: Psest_1690 - beta-ketoacyl-acyl-carrier-protein synthase II, at 1,797,682 to 1,798,926 _1690 Psest_1691: Psest_1691 - aminodeoxychorismate lyase, at 1,798,923 to 1,799,744 _1691 Psest_1692: Psest_1692 - conserved hypothetical protein, YceG family, at 1,799,741 to 1,800,811 _1692 Psest_1693: Psest_1693 - thymidylate kinase, at 1,800,808 to 1,801,440 _1693 Psest_1694: Psest_1694 - DNA polymerase III, delta' subunit, at 1,801,433 to 1,802,419 _1694 Position (kb) 1799 1800 1801Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1798.955 kb on + strandat 1798.957 kb on + strandat 1799.027 kb on + strand, within Psest_1691at 1799.028 kb on - strand, within Psest_1691at 1799.423 kb on + strand, within Psest_1691at 1799.423 kb on + strand, within Psest_1691at 1799.640 kb on + strand, within Psest_1691at 1799.640 kb on + strand, within Psest_1691at 1800.048 kb on + strand, within Psest_1692at 1800.074 kb on + strand, within Psest_1692at 1800.267 kb on + strand, within Psest_1692at 1800.267 kb on + strand, within Psest_1692at 1800.267 kb on + strand, within Psest_1692at 1800.267 kb on + strand, within Psest_1692at 1800.267 kb on + strand, within Psest_1692at 1800.267 kb on + strand, within Psest_1692at 1800.267 kb on + strand, within Psest_1692at 1800.359 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.559 kb on + strand, within Psest_1692at 1800.559 kb on + strand, within Psest_1692at 1800.559 kb on + strand, within Psest_1692at 1800.563 kb on + strand, within Psest_1692at 1800.563 kb on + strand, within Psest_1692at 1800.563 kb on + strand, within Psest_1692at 1800.563 kb on + strand, within Psest_1692at 1800.563 kb on + strand, within Psest_1692at 1800.563 kb on + strand, within Psest_1692at 1800.563 kb on + strand, within Psest_1692at 1800.656 kb on + strand, within Psest_1692at 1800.656 kb on + strand, within Psest_1692at 1800.731 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Vancomycin 0.016 mg/ml
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1,798,955 + -0.2
1,798,957 + -1.0
1,799,027 + Psest_1691 0.13 -0.2
1,799,028 - Psest_1691 0.13 +0.3
1,799,423 + Psest_1691 0.61 +0.1
1,799,423 + Psest_1691 0.61 -0.0
1,799,640 + Psest_1691 0.87 +0.5
1,799,640 + Psest_1691 0.87 -3.0
1,800,048 + Psest_1692 0.29 +2.5
1,800,074 + Psest_1692 0.31 +2.2
1,800,267 + Psest_1692 0.49 +3.0
1,800,267 + Psest_1692 0.49 +1.2
1,800,267 + Psest_1692 0.49 +1.6
1,800,267 + Psest_1692 0.49 -0.2
1,800,267 + Psest_1692 0.49 +2.3
1,800,267 + Psest_1692 0.49 +2.4
1,800,267 + Psest_1692 0.49 +2.2
1,800,359 + Psest_1692 0.58 +2.4
1,800,491 + Psest_1692 0.70 +1.9
1,800,491 + Psest_1692 0.70 +2.9
1,800,491 + Psest_1692 0.70 +2.8
1,800,491 + Psest_1692 0.70 +2.2
1,800,491 + Psest_1692 0.70 +1.4
1,800,491 + Psest_1692 0.70 +2.1
1,800,491 + Psest_1692 0.70 +2.3
1,800,491 + Psest_1692 0.70 +2.8
1,800,491 + Psest_1692 0.70 +2.2
1,800,491 + Psest_1692 0.70 +1.0
1,800,491 + Psest_1692 0.70 +2.9
1,800,491 + Psest_1692 0.70 +1.0
1,800,491 + Psest_1692 0.70 +2.7
1,800,491 + Psest_1692 0.70 +1.7
1,800,491 + Psest_1692 0.70 +2.3
1,800,491 + Psest_1692 0.70 +1.1
1,800,559 + Psest_1692 0.76 +2.5
1,800,559 + Psest_1692 0.76 +1.4
1,800,559 + Psest_1692 0.76 +1.7
1,800,563 + Psest_1692 0.77 +1.9
1,800,563 + Psest_1692 0.77 +2.2
1,800,563 + Psest_1692 0.77 +1.4
1,800,563 + Psest_1692 0.77 +2.6
1,800,563 + Psest_1692 0.77 +2.8
1,800,563 + Psest_1692 0.77 +1.5
1,800,563 + Psest_1692 0.77 +1.4
1,800,656 + Psest_1692 0.85 +1.2
1,800,656 + Psest_1692 0.85 +2.5
1,800,731 + +2.2

Or see this region's nucleotide sequence