Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1573
Experiment: Def Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Def Vancomycin 0.016 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,674,673 | - | Psest_1571 | 0.84 | -0.9 | |
1,674,673 | - | Psest_1571 | 0.84 | -0.0 | |
1,674,813 | + | +0.7 | |||
1,674,921 | + | +1.1 | |||
1,674,991 | + | -0.3 | |||
1,675,166 | + | +0.1 | |||
1,675,166 | + | -0.7 | |||
1,675,167 | - | +1.7 | |||
1,675,389 | - | Psest_1572 | 0.49 | +0.3 | |
1,675,759 | + | Psest_1573 | 0.27 | +1.6 | |
1,675,760 | - | Psest_1573 | 0.27 | -1.4 | |
1,676,146 | + | Psest_1573 | 0.81 | +0.1 | |
1,676,318 | + | +0.6 | |||
1,676,945 | + | Psest_1574 | 0.67 | -1.5 | |
1,676,946 | - | Psest_1574 | 0.67 | -0.9 | |
1,676,946 | - | Psest_1574 | 0.67 | -1.2 | |
1,676,946 | - | Psest_1574 | 0.67 | +0.1 | |
1,676,989 | + | Psest_1574 | 0.73 | -1.2 | |
1,676,990 | - | Psest_1574 | 0.73 | +0.1 | |
1,676,990 | - | Psest_1574 | 0.73 | -0.9 | |
1,677,203 | - | +0.1 | |||
1,677,210 | + | +0.7 | |||
1,677,210 | + | -0.7 | |||
1,677,210 | + | -1.2 | |||
1,677,210 | + | -0.1 |
Or see this region's nucleotide sequence