Experiment: Def Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1373 and Psest_1374 are separated by 130 nucleotides Psest_1374 and Psest_1375 are separated by 352 nucleotides
Psest_1373: Psest_1373 - Serine hydrolase (FSH1)., at 1,481,928 to 1,482,875
_1373
Psest_1374: Psest_1374 - Arabinose efflux permease, at 1,483,006 to 1,484,232
_1374
Psest_1375: Psest_1375 - Methyl-accepting chemotaxis protein, at 1,484,585 to 1,486,606
_1375
Position (kb)
1483
1484
1485 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1482.075 kb on + strand, within Psest_1373 at 1482.075 kb on + strand, within Psest_1373 at 1482.076 kb on - strand, within Psest_1373 at 1482.103 kb on + strand, within Psest_1373 at 1482.103 kb on + strand, within Psest_1373 at 1482.104 kb on - strand, within Psest_1373 at 1482.104 kb on - strand, within Psest_1373 at 1482.133 kb on + strand, within Psest_1373 at 1482.133 kb on + strand, within Psest_1373 at 1482.134 kb on - strand, within Psest_1373 at 1482.159 kb on + strand, within Psest_1373 at 1482.259 kb on - strand, within Psest_1373 at 1482.259 kb on - strand, within Psest_1373 at 1482.259 kb on - strand, within Psest_1373 at 1482.391 kb on + strand, within Psest_1373 at 1482.391 kb on + strand, within Psest_1373 at 1482.460 kb on + strand, within Psest_1373 at 1482.461 kb on - strand, within Psest_1373 at 1482.461 kb on - strand, within Psest_1373 at 1482.601 kb on + strand, within Psest_1373 at 1482.601 kb on + strand, within Psest_1373 at 1482.602 kb on - strand, within Psest_1373 at 1482.899 kb on + strand at 1482.899 kb on + strand at 1482.906 kb on - strand at 1482.906 kb on - strand at 1482.960 kb on + strand at 1482.960 kb on + strand at 1482.960 kb on + strand at 1482.960 kb on + strand at 1482.960 kb on + strand at 1482.961 kb on - strand at 1482.961 kb on - strand at 1482.961 kb on - strand at 1482.961 kb on - strand at 1482.961 kb on - strand at 1482.961 kb on - strand at 1482.961 kb on - strand at 1482.961 kb on - strand at 1483.045 kb on + strand at 1483.115 kb on + strand at 1483.115 kb on + strand at 1483.345 kb on + strand, within Psest_1374 at 1483.346 kb on - strand, within Psest_1374 at 1483.346 kb on - strand, within Psest_1374 at 1483.351 kb on + strand, within Psest_1374 at 1483.352 kb on - strand, within Psest_1374 at 1483.523 kb on + strand, within Psest_1374 at 1483.524 kb on - strand, within Psest_1374 at 1483.524 kb on - strand, within Psest_1374 at 1483.524 kb on - strand, within Psest_1374 at 1483.524 kb on - strand, within Psest_1374 at 1483.677 kb on + strand, within Psest_1374 at 1483.862 kb on + strand, within Psest_1374 at 1483.862 kb on + strand, within Psest_1374 at 1483.862 kb on + strand, within Psest_1374 at 1483.863 kb on - strand, within Psest_1374 at 1483.863 kb on - strand, within Psest_1374 at 1483.863 kb on - strand, within Psest_1374 at 1484.045 kb on + strand, within Psest_1374 at 1484.045 kb on + strand, within Psest_1374 at 1484.046 kb on - strand, within Psest_1374 at 1484.046 kb on - strand, within Psest_1374 at 1484.046 kb on - strand, within Psest_1374 at 1484.046 kb on - strand, within Psest_1374 at 1484.236 kb on + strand at 1484.265 kb on - strand at 1484.265 kb on - strand at 1484.420 kb on - strand at 1484.439 kb on + strand at 1484.439 kb on + strand at 1484.440 kb on - strand at 1484.633 kb on + strand at 1484.633 kb on + strand at 1485.008 kb on + strand, within Psest_1375 at 1485.008 kb on + strand, within Psest_1375 at 1485.104 kb on + strand, within Psest_1375 at 1485.104 kb on + strand, within Psest_1375 at 1485.104 kb on + strand, within Psest_1375 at 1485.104 kb on + strand, within Psest_1375 at 1485.105 kb on - strand, within Psest_1375 at 1485.105 kb on - strand, within Psest_1375 at 1485.105 kb on - strand, within Psest_1375 at 1485.105 kb on - strand, within Psest_1375 at 1485.105 kb on - strand, within Psest_1375 at 1485.105 kb on - strand, within Psest_1375 at 1485.105 kb on - strand, within Psest_1375 at 1485.105 kb on - strand, within Psest_1375 at 1485.107 kb on + strand, within Psest_1375 at 1485.107 kb on + strand, within Psest_1375 at 1485.108 kb on - strand, within Psest_1375 at 1485.108 kb on - strand, within Psest_1375 at 1485.108 kb on - strand, within Psest_1375 at 1485.108 kb on - strand, within Psest_1375
Per-strain Table
Position Strand Gene LocusTag Fraction Def Vancomycin 0.016 mg/ml remove 1,482,075 + Psest_1373 0.16 +2.0 1,482,075 + Psest_1373 0.16 +2.1 1,482,076 - Psest_1373 0.16 -0.1 1,482,103 + Psest_1373 0.18 -0.7 1,482,103 + Psest_1373 0.18 +0.2 1,482,104 - Psest_1373 0.19 +0.5 1,482,104 - Psest_1373 0.19 +0.5 1,482,133 + Psest_1373 0.22 -2.0 1,482,133 + Psest_1373 0.22 +1.2 1,482,134 - Psest_1373 0.22 -0.0 1,482,159 + Psest_1373 0.24 +0.9 1,482,259 - Psest_1373 0.35 -0.4 1,482,259 - Psest_1373 0.35 -0.5 1,482,259 - Psest_1373 0.35 +0.4 1,482,391 + Psest_1373 0.49 -1.9 1,482,391 + Psest_1373 0.49 -0.1 1,482,460 + Psest_1373 0.56 -2.3 1,482,461 - Psest_1373 0.56 +1.1 1,482,461 - Psest_1373 0.56 +0.8 1,482,601 + Psest_1373 0.71 -0.0 1,482,601 + Psest_1373 0.71 -0.1 1,482,602 - Psest_1373 0.71 -0.5 1,482,899 + -0.4 1,482,899 + -1.2 1,482,906 - +1.0 1,482,906 - -0.1 1,482,960 + +0.6 1,482,960 + +0.4 1,482,960 + +0.1 1,482,960 + -0.7 1,482,960 + +0.0 1,482,961 - +0.4 1,482,961 - -0.1 1,482,961 - -0.2 1,482,961 - -1.6 1,482,961 - +0.3 1,482,961 - -1.6 1,482,961 - +0.6 1,482,961 - -0.6 1,483,045 + +0.5 1,483,115 + -1.9 1,483,115 + -3.1 1,483,345 + Psest_1374 0.28 +0.1 1,483,346 - Psest_1374 0.28 +0.3 1,483,346 - Psest_1374 0.28 -1.8 1,483,351 + Psest_1374 0.28 -0.8 1,483,352 - Psest_1374 0.28 -2.0 1,483,523 + Psest_1374 0.42 -0.9 1,483,524 - Psest_1374 0.42 -0.4 1,483,524 - Psest_1374 0.42 +0.3 1,483,524 - Psest_1374 0.42 -0.4 1,483,524 - Psest_1374 0.42 +0.1 1,483,677 + Psest_1374 0.55 +0.7 1,483,862 + Psest_1374 0.70 -1.5 1,483,862 + Psest_1374 0.70 -0.1 1,483,862 + Psest_1374 0.70 -2.5 1,483,863 - Psest_1374 0.70 -0.1 1,483,863 - Psest_1374 0.70 -0.4 1,483,863 - Psest_1374 0.70 -1.0 1,484,045 + Psest_1374 0.85 +0.3 1,484,045 + Psest_1374 0.85 -0.6 1,484,046 - Psest_1374 0.85 +0.4 1,484,046 - Psest_1374 0.85 -0.7 1,484,046 - Psest_1374 0.85 -0.3 1,484,046 - Psest_1374 0.85 -0.3 1,484,236 + -0.3 1,484,265 - +0.7 1,484,265 - +1.7 1,484,420 - -0.3 1,484,439 + -1.1 1,484,439 + -0.6 1,484,440 - -1.3 1,484,633 + +0.3 1,484,633 + +0.7 1,485,008 + Psest_1375 0.21 +0.3 1,485,008 + Psest_1375 0.21 -1.1 1,485,104 + Psest_1375 0.26 +0.3 1,485,104 + Psest_1375 0.26 -1.5 1,485,104 + Psest_1375 0.26 +0.1 1,485,104 + Psest_1375 0.26 -0.8 1,485,105 - Psest_1375 0.26 -0.9 1,485,105 - Psest_1375 0.26 -0.2 1,485,105 - Psest_1375 0.26 -0.6 1,485,105 - Psest_1375 0.26 +0.7 1,485,105 - Psest_1375 0.26 +0.2 1,485,105 - Psest_1375 0.26 +0.5 1,485,105 - Psest_1375 0.26 +1.4 1,485,105 - Psest_1375 0.26 +0.3 1,485,107 + Psest_1375 0.26 +1.0 1,485,107 + Psest_1375 0.26 +0.4 1,485,108 - Psest_1375 0.26 +0.4 1,485,108 - Psest_1375 0.26 +0.1 1,485,108 - Psest_1375 0.26 +0.2 1,485,108 - Psest_1375 0.26 -1.8
Or see this region's nucleotide sequence