Experiment: Def Phosphomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4185 and Psest_4186 are separated by 23 nucleotides Psest_4186 and Psest_4187 are separated by 102 nucleotides
Psest_4185: Psest_4185 - hypothetical protein, at 4,362,291 to 4,363,712
_4185
Psest_4186: Psest_4186 - Methylase of polypeptide chain release factors, at 4,363,736 to 4,364,683
_4186
Psest_4187: Psest_4187 - Predicted permeases, at 4,364,786 to 4,365,718
_4187
Position (kb)
4363
4364
4365 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4362.936 kb on + strand, within Psest_4185 at 4362.936 kb on + strand, within Psest_4185 at 4362.937 kb on - strand, within Psest_4185 at 4362.937 kb on - strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4363.218 kb on + strand, within Psest_4185 at 4363.392 kb on + strand, within Psest_4185 at 4364.025 kb on + strand, within Psest_4186 at 4364.025 kb on + strand, within Psest_4186 at 4364.025 kb on + strand, within Psest_4186 at 4364.026 kb on - strand, within Psest_4186 at 4364.026 kb on - strand, within Psest_4186 at 4364.087 kb on + strand, within Psest_4186 at 4364.363 kb on + strand, within Psest_4186 at 4364.364 kb on - strand, within Psest_4186 at 4364.364 kb on - strand, within Psest_4186 at 4364.486 kb on + strand, within Psest_4186 at 4364.487 kb on - strand, within Psest_4186 at 4364.487 kb on - strand, within Psest_4186 at 4364.487 kb on - strand, within Psest_4186 at 4364.487 kb on - strand, within Psest_4186 at 4364.596 kb on - strand at 4364.596 kb on - strand at 4364.596 kb on - strand at 4364.627 kb on - strand at 4364.738 kb on - strand at 4364.742 kb on + strand at 4364.742 kb on + strand at 4364.747 kb on - strand at 4364.760 kb on + strand at 4364.798 kb on + strand at 4364.901 kb on + strand, within Psest_4187 at 4364.901 kb on + strand, within Psest_4187 at 4364.902 kb on - strand, within Psest_4187 at 4364.902 kb on - strand, within Psest_4187 at 4364.902 kb on - strand, within Psest_4187 at 4364.902 kb on - strand, within Psest_4187 at 4364.902 kb on - strand, within Psest_4187 at 4364.946 kb on + strand, within Psest_4187 at 4364.988 kb on + strand, within Psest_4187 at 4364.989 kb on - strand, within Psest_4187 at 4365.233 kb on + strand, within Psest_4187 at 4365.233 kb on + strand, within Psest_4187 at 4365.233 kb on + strand, within Psest_4187 at 4365.234 kb on - strand, within Psest_4187 at 4365.234 kb on - strand, within Psest_4187 at 4365.396 kb on + strand, within Psest_4187 at 4365.397 kb on - strand, within Psest_4187 at 4365.397 kb on - strand, within Psest_4187 at 4365.397 kb on - strand, within Psest_4187 at 4365.491 kb on + strand, within Psest_4187 at 4365.491 kb on + strand, within Psest_4187 at 4365.491 kb on + strand, within Psest_4187 at 4365.663 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Phosphomycin 0.125 mg/ml remove 4,362,936 + Psest_4185 0.45 -0.6 4,362,936 + Psest_4185 0.45 -0.6 4,362,937 - Psest_4185 0.45 +1.0 4,362,937 - Psest_4185 0.45 +1.6 4,362,969 + Psest_4185 0.48 +1.4 4,362,969 + Psest_4185 0.48 -0.2 4,362,969 + Psest_4185 0.48 -0.4 4,362,969 + Psest_4185 0.48 +0.1 4,362,969 + Psest_4185 0.48 -0.6 4,362,969 + Psest_4185 0.48 -0.6 4,362,969 + Psest_4185 0.48 -0.6 4,362,969 + Psest_4185 0.48 -1.1 4,362,969 + Psest_4185 0.48 +0.4 4,362,970 - Psest_4185 0.48 -0.3 4,362,970 - Psest_4185 0.48 -0.3 4,362,970 - Psest_4185 0.48 +0.6 4,362,970 - Psest_4185 0.48 +1.3 4,362,970 - Psest_4185 0.48 -1.3 4,362,970 - Psest_4185 0.48 +0.2 4,362,970 - Psest_4185 0.48 +0.7 4,362,970 - Psest_4185 0.48 +0.7 4,362,970 - Psest_4185 0.48 -1.8 4,362,970 - Psest_4185 0.48 +0.4 4,362,970 - Psest_4185 0.48 -0.8 4,362,970 - Psest_4185 0.48 +1.6 4,363,218 + Psest_4185 0.65 +1.7 4,363,392 + Psest_4185 0.77 -0.8 4,364,025 + Psest_4186 0.30 +1.0 4,364,025 + Psest_4186 0.30 +1.4 4,364,025 + Psest_4186 0.30 +0.4 4,364,026 - Psest_4186 0.31 -0.8 4,364,026 - Psest_4186 0.31 -1.0 4,364,087 + Psest_4186 0.37 +0.2 4,364,363 + Psest_4186 0.66 -0.5 4,364,364 - Psest_4186 0.66 -1.3 4,364,364 - Psest_4186 0.66 +1.0 4,364,486 + Psest_4186 0.79 -1.8 4,364,487 - Psest_4186 0.79 -0.3 4,364,487 - Psest_4186 0.79 +0.2 4,364,487 - Psest_4186 0.79 +1.6 4,364,487 - Psest_4186 0.79 +0.0 4,364,596 - +0.2 4,364,596 - -0.0 4,364,596 - +0.2 4,364,627 - -1.4 4,364,738 - -0.3 4,364,742 + +1.4 4,364,742 + +1.1 4,364,747 - -0.6 4,364,760 + +0.1 4,364,798 + +0.3 4,364,901 + Psest_4187 0.12 +0.5 4,364,901 + Psest_4187 0.12 -1.6 4,364,902 - Psest_4187 0.12 +0.8 4,364,902 - Psest_4187 0.12 -1.3 4,364,902 - Psest_4187 0.12 -1.3 4,364,902 - Psest_4187 0.12 +0.4 4,364,902 - Psest_4187 0.12 -0.8 4,364,946 + Psest_4187 0.17 +2.0 4,364,988 + Psest_4187 0.22 -0.2 4,364,989 - Psest_4187 0.22 -0.5 4,365,233 + Psest_4187 0.48 +0.9 4,365,233 + Psest_4187 0.48 -0.8 4,365,233 + Psest_4187 0.48 -1.6 4,365,234 - Psest_4187 0.48 -0.3 4,365,234 - Psest_4187 0.48 +0.0 4,365,396 + Psest_4187 0.65 +0.0 4,365,397 - Psest_4187 0.65 -0.3 4,365,397 - Psest_4187 0.65 +1.4 4,365,397 - Psest_4187 0.65 -0.3 4,365,491 + Psest_4187 0.76 -1.1 4,365,491 + Psest_4187 0.76 -1.3 4,365,491 + Psest_4187 0.76 +0.3 4,365,663 + +0.2
Or see this region's nucleotide sequence