Experiment: Def Phosphomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4182 and Psest_4183 are separated by 27 nucleotides Psest_4183 and Psest_4184 are separated by 166 nucleotides Psest_4184 and Psest_4185 are separated by 184 nucleotides Psest_4185 and Psest_4186 are separated by 23 nucleotides
Psest_4182: Psest_4182 - Flagellar biosynthesis pathway, component FlhA, at 4,359,268 to 4,361,364
_4182
Psest_4183: Psest_4183 - PilZ domain., at 4,361,392 to 4,361,733
_4183
Psest_4184: Psest_4184 - hypothetical protein, at 4,361,900 to 4,362,106
_4184
Psest_4185: Psest_4185 - hypothetical protein, at 4,362,291 to 4,363,712
_4185
Psest_4186: Psest_4186 - Methylase of polypeptide chain release factors, at 4,363,736 to 4,364,683
_4186
Position (kb)
4362
4363
4364 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4361.393 kb on + strand at 4361.394 kb on - strand at 4361.583 kb on - strand, within Psest_4183 at 4361.651 kb on + strand, within Psest_4183 at 4361.652 kb on - strand, within Psest_4183 at 4361.652 kb on - strand, within Psest_4183 at 4361.803 kb on + strand at 4361.803 kb on + strand at 4361.803 kb on + strand at 4361.803 kb on + strand at 4361.803 kb on + strand at 4361.803 kb on + strand at 4361.803 kb on + strand at 4361.803 kb on + strand at 4361.803 kb on + strand at 4361.803 kb on + strand at 4361.804 kb on - strand at 4361.804 kb on - strand at 4361.804 kb on - strand at 4361.804 kb on - strand at 4361.804 kb on - strand at 4361.804 kb on - strand at 4361.804 kb on - strand at 4361.804 kb on - strand at 4361.804 kb on - strand at 4361.804 kb on - strand at 4361.804 kb on - strand at 4361.804 kb on - strand at 4361.804 kb on - strand at 4361.804 kb on - strand at 4361.804 kb on - strand at 4361.806 kb on - strand at 4361.839 kb on + strand at 4361.840 kb on - strand at 4361.967 kb on + strand, within Psest_4184 at 4361.967 kb on + strand, within Psest_4184 at 4361.967 kb on + strand, within Psest_4184 at 4361.967 kb on + strand, within Psest_4184 at 4361.967 kb on + strand, within Psest_4184 at 4361.967 kb on + strand, within Psest_4184 at 4361.967 kb on + strand, within Psest_4184 at 4361.968 kb on - strand, within Psest_4184 at 4361.968 kb on - strand, within Psest_4184 at 4361.968 kb on - strand, within Psest_4184 at 4362.159 kb on + strand at 4362.160 kb on - strand at 4362.237 kb on + strand at 4362.238 kb on - strand at 4362.268 kb on + strand at 4362.268 kb on + strand at 4362.268 kb on + strand at 4362.279 kb on + strand at 4362.279 kb on + strand at 4362.279 kb on + strand at 4362.279 kb on + strand at 4362.279 kb on + strand at 4362.279 kb on + strand at 4362.279 kb on + strand at 4362.279 kb on + strand at 4362.280 kb on - strand at 4362.366 kb on + strand at 4362.367 kb on - strand at 4362.367 kb on - strand at 4362.540 kb on + strand, within Psest_4185 at 4362.541 kb on - strand, within Psest_4185 at 4362.654 kb on + strand, within Psest_4185 at 4362.708 kb on + strand, within Psest_4185 at 4362.708 kb on + strand, within Psest_4185 at 4362.709 kb on - strand, within Psest_4185 at 4362.709 kb on - strand, within Psest_4185 at 4362.709 kb on - strand, within Psest_4185 at 4362.709 kb on - strand, within Psest_4185 at 4362.709 kb on - strand, within Psest_4185 at 4362.936 kb on + strand, within Psest_4185 at 4362.936 kb on + strand, within Psest_4185 at 4362.937 kb on - strand, within Psest_4185 at 4362.937 kb on - strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.969 kb on + strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4362.970 kb on - strand, within Psest_4185 at 4363.218 kb on + strand, within Psest_4185 at 4363.392 kb on + strand, within Psest_4185 at 4364.025 kb on + strand, within Psest_4186 at 4364.025 kb on + strand, within Psest_4186 at 4364.025 kb on + strand, within Psest_4186 at 4364.026 kb on - strand, within Psest_4186 at 4364.026 kb on - strand, within Psest_4186 at 4364.087 kb on + strand, within Psest_4186 at 4364.363 kb on + strand, within Psest_4186 at 4364.364 kb on - strand, within Psest_4186 at 4364.364 kb on - strand, within Psest_4186 at 4364.486 kb on + strand, within Psest_4186 at 4364.487 kb on - strand, within Psest_4186 at 4364.487 kb on - strand, within Psest_4186 at 4364.487 kb on - strand, within Psest_4186 at 4364.487 kb on - strand, within Psest_4186 at 4364.596 kb on - strand at 4364.596 kb on - strand at 4364.596 kb on - strand at 4364.627 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Phosphomycin 0.125 mg/ml remove 4,361,393 + +0.4 4,361,394 - -0.4 4,361,583 - Psest_4183 0.56 +0.0 4,361,651 + Psest_4183 0.76 -0.1 4,361,652 - Psest_4183 0.76 +0.4 4,361,652 - Psest_4183 0.76 +0.8 4,361,803 + +0.4 4,361,803 + +0.4 4,361,803 + +0.0 4,361,803 + -0.8 4,361,803 + -0.6 4,361,803 + +0.4 4,361,803 + -0.6 4,361,803 + +0.0 4,361,803 + -1.4 4,361,803 + +0.4 4,361,804 - +0.1 4,361,804 - +0.4 4,361,804 - +0.3 4,361,804 - -1.1 4,361,804 - +0.2 4,361,804 - -1.0 4,361,804 - +0.4 4,361,804 - +1.0 4,361,804 - +0.1 4,361,804 - -0.8 4,361,804 - -0.8 4,361,804 - +0.6 4,361,804 - -0.3 4,361,804 - -0.0 4,361,804 - -0.6 4,361,806 - +0.1 4,361,839 + +1.0 4,361,840 - +0.1 4,361,967 + Psest_4184 0.32 -0.5 4,361,967 + Psest_4184 0.32 -1.6 4,361,967 + Psest_4184 0.32 +2.0 4,361,967 + Psest_4184 0.32 -0.3 4,361,967 + Psest_4184 0.32 -1.0 4,361,967 + Psest_4184 0.32 +1.0 4,361,967 + Psest_4184 0.32 +0.0 4,361,968 - Psest_4184 0.33 -0.3 4,361,968 - Psest_4184 0.33 +0.0 4,361,968 - Psest_4184 0.33 +0.0 4,362,159 + -0.1 4,362,160 - +0.7 4,362,237 + +0.3 4,362,238 - -0.7 4,362,268 + +0.7 4,362,268 + -0.8 4,362,268 + -1.2 4,362,279 + +0.9 4,362,279 + -0.3 4,362,279 + -2.1 4,362,279 + -0.7 4,362,279 + +0.0 4,362,279 + +1.0 4,362,279 + +0.2 4,362,279 + +0.2 4,362,280 - +1.0 4,362,366 + -1.3 4,362,367 - -1.4 4,362,367 - +0.4 4,362,540 + Psest_4185 0.18 +0.8 4,362,541 - Psest_4185 0.18 +0.6 4,362,654 + Psest_4185 0.26 +0.4 4,362,708 + Psest_4185 0.29 -0.6 4,362,708 + Psest_4185 0.29 -0.9 4,362,709 - Psest_4185 0.29 +1.5 4,362,709 - Psest_4185 0.29 +0.4 4,362,709 - Psest_4185 0.29 -0.3 4,362,709 - Psest_4185 0.29 -0.9 4,362,709 - Psest_4185 0.29 +0.1 4,362,936 + Psest_4185 0.45 -0.6 4,362,936 + Psest_4185 0.45 -0.6 4,362,937 - Psest_4185 0.45 +1.0 4,362,937 - Psest_4185 0.45 +1.6 4,362,969 + Psest_4185 0.48 +1.4 4,362,969 + Psest_4185 0.48 -0.2 4,362,969 + Psest_4185 0.48 -0.4 4,362,969 + Psest_4185 0.48 +0.1 4,362,969 + Psest_4185 0.48 -0.6 4,362,969 + Psest_4185 0.48 -0.6 4,362,969 + Psest_4185 0.48 -0.6 4,362,969 + Psest_4185 0.48 -1.1 4,362,969 + Psest_4185 0.48 +0.4 4,362,970 - Psest_4185 0.48 -0.3 4,362,970 - Psest_4185 0.48 -0.3 4,362,970 - Psest_4185 0.48 +0.6 4,362,970 - Psest_4185 0.48 +1.3 4,362,970 - Psest_4185 0.48 -1.3 4,362,970 - Psest_4185 0.48 +0.2 4,362,970 - Psest_4185 0.48 +0.7 4,362,970 - Psest_4185 0.48 +0.7 4,362,970 - Psest_4185 0.48 -1.8 4,362,970 - Psest_4185 0.48 +0.4 4,362,970 - Psest_4185 0.48 -0.8 4,362,970 - Psest_4185 0.48 +1.6 4,363,218 + Psest_4185 0.65 +1.7 4,363,392 + Psest_4185 0.77 -0.8 4,364,025 + Psest_4186 0.30 +1.0 4,364,025 + Psest_4186 0.30 +1.4 4,364,025 + Psest_4186 0.30 +0.4 4,364,026 - Psest_4186 0.31 -0.8 4,364,026 - Psest_4186 0.31 -1.0 4,364,087 + Psest_4186 0.37 +0.2 4,364,363 + Psest_4186 0.66 -0.5 4,364,364 - Psest_4186 0.66 -1.3 4,364,364 - Psest_4186 0.66 +1.0 4,364,486 + Psest_4186 0.79 -1.8 4,364,487 - Psest_4186 0.79 -0.3 4,364,487 - Psest_4186 0.79 +0.2 4,364,487 - Psest_4186 0.79 +1.6 4,364,487 - Psest_4186 0.79 +0.0 4,364,596 - +0.2 4,364,596 - -0.0 4,364,596 - +0.2 4,364,627 - -1.4
Or see this region's nucleotide sequence