Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0040

Experiment: Def Phosphomycin 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0039 and Psest_0040 are separated by 248 nucleotidesPsest_0040 and Psest_0041 are separated by 184 nucleotides Psest_0039: Psest_0039 - phosphoglucomutase, alpha-D-glucose phosphate-specific, at 41,591 to 43,255 _0039 Psest_0040: Psest_0040 - Protein of unknown function (DUF2934)., at 43,504 to 43,701 _0040 Psest_0041: Psest_0041 - Uncharacterized protein conserved in bacteria, at 43,886 to 45,367 _0041 Position (kb) 43 44Strain fitness (log2 ratio) -2 -1 0 1 2 3at 42.505 kb on - strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.601 kb on - strand, within Psest_0039at 42.601 kb on - strand, within Psest_0039at 42.601 kb on - strand, within Psest_0039at 42.601 kb on - strand, within Psest_0039at 42.601 kb on - strand, within Psest_0039at 42.762 kb on + strand, within Psest_0039at 42.762 kb on + strand, within Psest_0039at 42.762 kb on + strand, within Psest_0039at 42.762 kb on + strand, within Psest_0039at 42.762 kb on + strand, within Psest_0039at 42.762 kb on + strand, within Psest_0039at 42.762 kb on + strand, within Psest_0039at 42.763 kb on - strand, within Psest_0039at 42.763 kb on - strand, within Psest_0039at 42.763 kb on - strand, within Psest_0039at 42.763 kb on - strand, within Psest_0039at 42.763 kb on - strand, within Psest_0039at 42.763 kb on - strand, within Psest_0039at 42.846 kb on + strand, within Psest_0039at 42.846 kb on + strand, within Psest_0039at 42.846 kb on + strand, within Psest_0039at 42.847 kb on - strand, within Psest_0039at 42.847 kb on - strand, within Psest_0039at 42.847 kb on - strand, within Psest_0039at 43.176 kb on + strandat 43.176 kb on + strandat 43.176 kb on + strandat 43.177 kb on - strandat 43.177 kb on - strandat 43.177 kb on - strandat 43.177 kb on - strandat 43.177 kb on - strandat 43.177 kb on - strandat 43.337 kb on + strandat 43.338 kb on - strandat 43.347 kb on + strandat 43.347 kb on + strandat 43.348 kb on - strandat 43.537 kb on + strand, within Psest_0040at 43.538 kb on - strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.622 kb on + strand, within Psest_0040at 43.622 kb on - strand, within Psest_0040at 43.622 kb on - strand, within Psest_0040at 43.622 kb on - strand, within Psest_0040at 43.622 kb on - strand, within Psest_0040at 43.622 kb on - strand, within Psest_0040at 43.622 kb on - strand, within Psest_0040at 43.622 kb on - strand, within Psest_0040at 43.699 kb on + strandat 43.818 kb on + strandat 43.818 kb on + strandat 43.819 kb on - strandat 43.819 kb on - strandat 43.914 kb on + strandat 43.915 kb on - strandat 43.946 kb on + strandat 43.947 kb on - strandat 44.093 kb on + strand, within Psest_0041at 44.339 kb on + strand, within Psest_0041at 44.558 kb on + strand, within Psest_0041at 44.558 kb on + strand, within Psest_0041at 44.558 kb on + strand, within Psest_0041at 44.559 kb on - strand, within Psest_0041at 44.559 kb on - strand, within Psest_0041at 44.559 kb on - strand, within Psest_0041

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Phosphomycin 0.125 mg/ml
remove
42,505 - Psest_0039 0.55 +0.5
42,600 + Psest_0039 0.61 +0.1
42,600 + Psest_0039 0.61 +2.1
42,600 + Psest_0039 0.61 +1.5
42,600 + Psest_0039 0.61 +2.1
42,600 + Psest_0039 0.61 +0.9
42,600 + Psest_0039 0.61 -2.0
42,600 + Psest_0039 0.61 -0.6
42,600 + Psest_0039 0.61 +0.3
42,600 + Psest_0039 0.61 +0.4
42,600 + Psest_0039 0.61 +0.3
42,600 + Psest_0039 0.61 -0.6
42,601 - Psest_0039 0.61 -0.2
42,601 - Psest_0039 0.61 -1.5
42,601 - Psest_0039 0.61 -0.2
42,601 - Psest_0039 0.61 -0.2
42,601 - Psest_0039 0.61 -1.2
42,762 + Psest_0039 0.70 +1.5
42,762 + Psest_0039 0.70 +1.3
42,762 + Psest_0039 0.70 +0.3
42,762 + Psest_0039 0.70 +1.5
42,762 + Psest_0039 0.70 -0.2
42,762 + Psest_0039 0.70 -0.3
42,762 + Psest_0039 0.70 -0.2
42,763 - Psest_0039 0.70 -1.4
42,763 - Psest_0039 0.70 -0.9
42,763 - Psest_0039 0.70 -0.5
42,763 - Psest_0039 0.70 -1.7
42,763 - Psest_0039 0.70 -0.2
42,763 - Psest_0039 0.70 -0.8
42,846 + Psest_0039 0.75 +0.4
42,846 + Psest_0039 0.75 +1.3
42,846 + Psest_0039 0.75 -0.7
42,847 - Psest_0039 0.75 -0.5
42,847 - Psest_0039 0.75 -0.8
42,847 - Psest_0039 0.75 -1.2
43,176 + +1.1
43,176 + +0.3
43,176 + -0.7
43,177 - +0.9
43,177 - +3.1
43,177 - -0.5
43,177 - +1.3
43,177 - +0.2
43,177 - -0.7
43,337 + -0.9
43,338 - -0.5
43,347 + -1.1
43,347 + -0.3
43,348 - +0.5
43,537 + Psest_0040 0.17 -0.5
43,538 - Psest_0040 0.17 -0.7
43,621 + Psest_0040 0.59 -0.9
43,621 + Psest_0040 0.59 +0.1
43,621 + Psest_0040 0.59 -1.8
43,621 + Psest_0040 0.59 +0.5
43,621 + Psest_0040 0.59 +2.1
43,621 + Psest_0040 0.59 -0.9
43,621 + Psest_0040 0.59 -0.2
43,621 + Psest_0040 0.59 -1.0
43,621 + Psest_0040 0.59 +0.7
43,622 + Psest_0040 0.60 -1.7
43,622 - Psest_0040 0.60 -0.2
43,622 - Psest_0040 0.60 -0.4
43,622 - Psest_0040 0.60 +1.3
43,622 - Psest_0040 0.60 -0.5
43,622 - Psest_0040 0.60 -1.7
43,622 - Psest_0040 0.60 -0.9
43,622 - Psest_0040 0.60 -0.3
43,699 + -0.1
43,818 + -0.5
43,818 + -0.1
43,819 - +1.5
43,819 - -1.8
43,914 + -1.4
43,915 - -0.1
43,946 + -0.7
43,947 - +0.8
44,093 + Psest_0041 0.14 -0.2
44,339 + Psest_0041 0.31 +2.1
44,558 + Psest_0041 0.45 -1.0
44,558 + Psest_0041 0.45 -1.7
44,558 + Psest_0041 0.45 -0.2
44,559 - Psest_0041 0.45 +0.4
44,559 - Psest_0041 0.45 -0.7
44,559 - Psest_0041 0.45 -1.1

Or see this region's nucleotide sequence