Experiment: Def Phosphomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3541 and Psest_3542 are separated by 22 nucleotides Psest_3542 and Psest_3543 overlap by 1 nucleotides Psest_3543 and Psest_3544 overlap by 4 nucleotides
Psest_3541: Psest_3541 - Outer membrane cobalamin receptor protein, at 3,721,659 to 3,723,521
_3541
Psest_3542: Psest_3542 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 3,723,544 to 3,724,344
_3542
Psest_3543: Psest_3543 - hypothetical protein, at 3,724,344 to 3,724,751
_3543
Psest_3544: Psest_3544 - GTP cyclohydrolase II, at 3,724,748 to 3,725,365
_3544
Position (kb)
3723
3724
3725 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3722.599 kb on + strand, within Psest_3541 at 3722.600 kb on - strand, within Psest_3541 at 3722.652 kb on + strand, within Psest_3541 at 3722.653 kb on - strand, within Psest_3541 at 3722.653 kb on - strand, within Psest_3541 at 3722.830 kb on + strand, within Psest_3541 at 3722.830 kb on + strand, within Psest_3541 at 3722.831 kb on - strand, within Psest_3541 at 3722.859 kb on + strand, within Psest_3541 at 3722.955 kb on + strand, within Psest_3541 at 3722.955 kb on + strand, within Psest_3541 at 3722.955 kb on + strand, within Psest_3541 at 3722.955 kb on + strand, within Psest_3541 at 3722.955 kb on + strand, within Psest_3541 at 3722.956 kb on - strand, within Psest_3541 at 3722.956 kb on - strand, within Psest_3541 at 3722.956 kb on - strand, within Psest_3541 at 3723.009 kb on + strand, within Psest_3541 at 3723.010 kb on - strand, within Psest_3541 at 3723.010 kb on - strand, within Psest_3541 at 3723.176 kb on + strand, within Psest_3541 at 3723.177 kb on - strand, within Psest_3541 at 3723.414 kb on + strand at 3723.415 kb on - strand at 3723.415 kb on - strand at 3723.415 kb on - strand at 3723.415 kb on - strand at 3723.434 kb on + strand at 3723.435 kb on - strand at 3723.435 kb on - strand at 3723.435 kb on - strand at 3723.435 kb on - strand at 3723.435 kb on - strand at 3723.435 kb on - strand at 3723.459 kb on + strand at 3723.459 kb on + strand at 3723.460 kb on - strand at 3723.520 kb on - strand at 3723.843 kb on + strand, within Psest_3542 at 3723.844 kb on - strand, within Psest_3542 at 3723.845 kb on + strand, within Psest_3542 at 3723.845 kb on + strand, within Psest_3542 at 3723.845 kb on + strand, within Psest_3542 at 3723.845 kb on + strand, within Psest_3542 at 3723.845 kb on + strand, within Psest_3542 at 3723.846 kb on - strand, within Psest_3542 at 3723.846 kb on - strand, within Psest_3542 at 3723.846 kb on - strand, within Psest_3542 at 3723.846 kb on - strand, within Psest_3542 at 3723.846 kb on - strand, within Psest_3542 at 3723.846 kb on - strand, within Psest_3542 at 3723.846 kb on - strand, within Psest_3542 at 3723.846 kb on - strand, within Psest_3542 at 3723.846 kb on - strand, within Psest_3542 at 3723.846 kb on - strand, within Psest_3542 at 3723.869 kb on + strand, within Psest_3542 at 3723.869 kb on + strand, within Psest_3542 at 3723.869 kb on + strand, within Psest_3542 at 3723.870 kb on - strand, within Psest_3542 at 3723.895 kb on + strand, within Psest_3542 at 3723.895 kb on + strand, within Psest_3542 at 3723.895 kb on + strand, within Psest_3542 at 3723.895 kb on + strand, within Psest_3542 at 3723.895 kb on + strand, within Psest_3542 at 3723.895 kb on + strand, within Psest_3542 at 3723.896 kb on - strand, within Psest_3542 at 3723.896 kb on - strand, within Psest_3542 at 3723.896 kb on - strand, within Psest_3542 at 3723.896 kb on - strand, within Psest_3542 at 3723.896 kb on - strand, within Psest_3542 at 3723.896 kb on - strand, within Psest_3542 at 3723.896 kb on - strand, within Psest_3542 at 3723.896 kb on - strand, within Psest_3542 at 3723.896 kb on - strand, within Psest_3542 at 3723.896 kb on - strand, within Psest_3542 at 3723.896 kb on - strand, within Psest_3542 at 3723.899 kb on + strand, within Psest_3542 at 3723.899 kb on + strand, within Psest_3542 at 3723.899 kb on + strand, within Psest_3542 at 3723.899 kb on + strand, within Psest_3542 at 3723.899 kb on + strand, within Psest_3542 at 3723.899 kb on + strand, within Psest_3542 at 3723.899 kb on + strand, within Psest_3542 at 3723.899 kb on + strand, within Psest_3542 at 3723.899 kb on + strand, within Psest_3542 at 3723.899 kb on + strand, within Psest_3542 at 3723.899 kb on + strand, within Psest_3542 at 3723.899 kb on + strand, within Psest_3542 at 3723.899 kb on + strand, within Psest_3542 at 3723.899 kb on + strand, within Psest_3542 at 3723.900 kb on - strand, within Psest_3542 at 3723.900 kb on - strand, within Psest_3542 at 3723.900 kb on - strand, within Psest_3542 at 3723.900 kb on - strand, within Psest_3542 at 3723.900 kb on - strand, within Psest_3542 at 3723.900 kb on - strand, within Psest_3542 at 3723.900 kb on - strand, within Psest_3542 at 3723.900 kb on - strand, within Psest_3542 at 3723.900 kb on - strand, within Psest_3542 at 3723.900 kb on - strand, within Psest_3542 at 3723.900 kb on - strand, within Psest_3542 at 3723.900 kb on - strand, within Psest_3542 at 3723.900 kb on - strand, within Psest_3542 at 3723.900 kb on - strand, within Psest_3542 at 3724.276 kb on + strand at 3724.330 kb on + strand at 3724.398 kb on + strand, within Psest_3543 at 3724.399 kb on - strand, within Psest_3543 at 3724.701 kb on - strand, within Psest_3543 at 3724.701 kb on - strand, within Psest_3543 at 3724.701 kb on - strand, within Psest_3543
Per-strain Table
Position Strand Gene LocusTag Fraction Def Phosphomycin 0.125 mg/ml remove 3,722,599 + Psest_3541 0.50 -0.0 3,722,600 - Psest_3541 0.51 -0.5 3,722,652 + Psest_3541 0.53 +0.8 3,722,653 - Psest_3541 0.53 -2.5 3,722,653 - Psest_3541 0.53 +0.6 3,722,830 + Psest_3541 0.63 +0.1 3,722,830 + Psest_3541 0.63 +0.3 3,722,831 - Psest_3541 0.63 +0.2 3,722,859 + Psest_3541 0.64 +0.7 3,722,955 + Psest_3541 0.70 -0.1 3,722,955 + Psest_3541 0.70 -0.6 3,722,955 + Psest_3541 0.70 -0.2 3,722,955 + Psest_3541 0.70 -0.4 3,722,955 + Psest_3541 0.70 +0.2 3,722,956 - Psest_3541 0.70 -0.9 3,722,956 - Psest_3541 0.70 -0.8 3,722,956 - Psest_3541 0.70 -0.2 3,723,009 + Psest_3541 0.72 +0.6 3,723,010 - Psest_3541 0.73 -0.3 3,723,010 - Psest_3541 0.73 +0.8 3,723,176 + Psest_3541 0.81 -0.9 3,723,177 - Psest_3541 0.81 -0.7 3,723,414 + -0.7 3,723,415 - -1.4 3,723,415 - +0.8 3,723,415 - -1.0 3,723,415 - +0.9 3,723,434 + -0.2 3,723,435 - -2.7 3,723,435 - +0.2 3,723,435 - -0.4 3,723,435 - -0.1 3,723,435 - -1.6 3,723,435 - -1.5 3,723,459 + -0.1 3,723,459 + -0.8 3,723,460 - -0.4 3,723,520 - +1.4 3,723,843 + Psest_3542 0.37 +0.2 3,723,844 - Psest_3542 0.37 +0.1 3,723,845 + Psest_3542 0.38 +1.8 3,723,845 + Psest_3542 0.38 -0.2 3,723,845 + Psest_3542 0.38 -1.8 3,723,845 + Psest_3542 0.38 -1.2 3,723,845 + Psest_3542 0.38 +1.1 3,723,846 - Psest_3542 0.38 -1.2 3,723,846 - Psest_3542 0.38 -0.1 3,723,846 - Psest_3542 0.38 -1.5 3,723,846 - Psest_3542 0.38 +0.4 3,723,846 - Psest_3542 0.38 -1.8 3,723,846 - Psest_3542 0.38 +0.8 3,723,846 - Psest_3542 0.38 -0.8 3,723,846 - Psest_3542 0.38 +0.3 3,723,846 - Psest_3542 0.38 +0.5 3,723,846 - Psest_3542 0.38 +0.7 3,723,869 + Psest_3542 0.41 +0.8 3,723,869 + Psest_3542 0.41 +0.5 3,723,869 + Psest_3542 0.41 -0.3 3,723,870 - Psest_3542 0.41 -1.0 3,723,895 + Psest_3542 0.44 -1.1 3,723,895 + Psest_3542 0.44 -1.7 3,723,895 + Psest_3542 0.44 -1.5 3,723,895 + Psest_3542 0.44 -0.6 3,723,895 + Psest_3542 0.44 -0.7 3,723,895 + Psest_3542 0.44 -0.7 3,723,896 - Psest_3542 0.44 -2.0 3,723,896 - Psest_3542 0.44 +0.8 3,723,896 - Psest_3542 0.44 +0.2 3,723,896 - Psest_3542 0.44 +0.2 3,723,896 - Psest_3542 0.44 -1.9 3,723,896 - Psest_3542 0.44 -1.0 3,723,896 - Psest_3542 0.44 -0.9 3,723,896 - Psest_3542 0.44 -0.8 3,723,896 - Psest_3542 0.44 +0.5 3,723,896 - Psest_3542 0.44 +0.8 3,723,896 - Psest_3542 0.44 -0.5 3,723,899 + Psest_3542 0.44 +1.3 3,723,899 + Psest_3542 0.44 -2.4 3,723,899 + Psest_3542 0.44 +0.4 3,723,899 + Psest_3542 0.44 -0.2 3,723,899 + Psest_3542 0.44 -0.2 3,723,899 + Psest_3542 0.44 +0.0 3,723,899 + Psest_3542 0.44 -0.1 3,723,899 + Psest_3542 0.44 -0.7 3,723,899 + Psest_3542 0.44 -0.1 3,723,899 + Psest_3542 0.44 +0.2 3,723,899 + Psest_3542 0.44 +0.8 3,723,899 + Psest_3542 0.44 -0.8 3,723,899 + Psest_3542 0.44 +0.5 3,723,899 + Psest_3542 0.44 -1.1 3,723,900 - Psest_3542 0.44 -1.3 3,723,900 - Psest_3542 0.44 -1.3 3,723,900 - Psest_3542 0.44 -0.3 3,723,900 - Psest_3542 0.44 -0.5 3,723,900 - Psest_3542 0.44 +0.1 3,723,900 - Psest_3542 0.44 -1.1 3,723,900 - Psest_3542 0.44 -0.4 3,723,900 - Psest_3542 0.44 -0.4 3,723,900 - Psest_3542 0.44 -0.8 3,723,900 - Psest_3542 0.44 +0.1 3,723,900 - Psest_3542 0.44 +1.4 3,723,900 - Psest_3542 0.44 +0.5 3,723,900 - Psest_3542 0.44 -1.1 3,723,900 - Psest_3542 0.44 -0.5 3,724,276 + -0.3 3,724,330 + -0.3 3,724,398 + Psest_3543 0.13 -0.0 3,724,399 - Psest_3543 0.13 +0.4 3,724,701 - Psest_3543 0.88 -1.2 3,724,701 - Psest_3543 0.88 -1.2 3,724,701 - Psest_3543 0.88 -0.2
Or see this region's nucleotide sequence