Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1319

Experiment: Def Phosphomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1317 and Psest_1318 overlap by 4 nucleotidesPsest_1318 and Psest_1319 overlap by 7 nucleotidesPsest_1319 and Psest_1320 are separated by 43 nucleotides Psest_1317: Psest_1317 - phosphonate ABC transporter, permease protein PhnE, at 1,418,068 to 1,418,835 _1317 Psest_1318: Psest_1318 - ABC-type phosphate/phosphonate transport system, permease component, at 1,418,832 to 1,419,665 _1318 Psest_1319: Psest_1319 - ABC-type phosphate/phosphonate transport system, ATPase component, at 1,419,659 to 1,420,489 _1319 Psest_1320: Psest_1320 - phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein, at 1,420,533 to 1,421,384 _1320 Position (kb) 1419 1420 1421Strain fitness (log2 ratio) -1 0 1 2at 1419.031 kb on + strand, within Psest_1318at 1419.031 kb on + strand, within Psest_1318at 1419.064 kb on - strand, within Psest_1318at 1419.154 kb on + strand, within Psest_1318at 1419.179 kb on - strand, within Psest_1318at 1419.459 kb on + strand, within Psest_1318at 1419.459 kb on + strand, within Psest_1318at 1419.459 kb on + strand, within Psest_1318at 1419.735 kb on + strandat 1419.735 kb on + strandat 1419.736 kb on - strandat 1419.736 kb on - strandat 1419.736 kb on - strandat 1419.962 kb on + strand, within Psest_1319at 1419.979 kb on - strand, within Psest_1319at 1420.041 kb on + strand, within Psest_1319at 1420.041 kb on + strand, within Psest_1319at 1420.041 kb on + strand, within Psest_1319at 1420.041 kb on + strand, within Psest_1319at 1420.042 kb on - strand, within Psest_1319at 1420.042 kb on - strand, within Psest_1319at 1420.042 kb on - strand, within Psest_1319at 1420.042 kb on - strand, within Psest_1319at 1420.042 kb on - strand, within Psest_1319at 1420.042 kb on - strand, within Psest_1319at 1420.042 kb on - strand, within Psest_1319at 1420.042 kb on - strand, within Psest_1319at 1420.042 kb on - strand, within Psest_1319at 1420.191 kb on - strand, within Psest_1319at 1420.191 kb on - strand, within Psest_1319at 1420.433 kb on - strandat 1420.729 kb on + strand, within Psest_1320at 1420.735 kb on + strand, within Psest_1320at 1420.735 kb on + strand, within Psest_1320at 1420.736 kb on - strand, within Psest_1320at 1420.736 kb on - strand, within Psest_1320at 1420.736 kb on - strand, within Psest_1320at 1420.903 kb on + strand, within Psest_1320at 1420.904 kb on - strand, within Psest_1320at 1420.904 kb on - strand, within Psest_1320at 1421.076 kb on + strand, within Psest_1320at 1421.076 kb on + strand, within Psest_1320at 1421.185 kb on + strand, within Psest_1320at 1421.185 kb on + strand, within Psest_1320at 1421.237 kb on - strand, within Psest_1320at 1421.333 kb on + strandat 1421.333 kb on + strandat 1421.333 kb on + strandat 1421.334 kb on - strandat 1421.405 kb on - strandat 1421.427 kb on + strandat 1421.427 kb on + strandat 1421.427 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Phosphomycin 0.125 mg/ml
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1,419,031 + Psest_1318 0.24 +0.9
1,419,031 + Psest_1318 0.24 +0.7
1,419,064 - Psest_1318 0.28 +0.3
1,419,154 + Psest_1318 0.39 -0.8
1,419,179 - Psest_1318 0.42 -0.5
1,419,459 + Psest_1318 0.75 -0.0
1,419,459 + Psest_1318 0.75 -1.5
1,419,459 + Psest_1318 0.75 +0.2
1,419,735 + -0.4
1,419,735 + +0.2
1,419,736 - -0.9
1,419,736 - -0.3
1,419,736 - +0.9
1,419,962 + Psest_1319 0.36 -0.1
1,419,979 - Psest_1319 0.39 +0.0
1,420,041 + Psest_1319 0.46 +0.9
1,420,041 + Psest_1319 0.46 -0.1
1,420,041 + Psest_1319 0.46 +0.5
1,420,041 + Psest_1319 0.46 +0.7
1,420,042 - Psest_1319 0.46 -1.1
1,420,042 - Psest_1319 0.46 -0.3
1,420,042 - Psest_1319 0.46 +0.3
1,420,042 - Psest_1319 0.46 -0.5
1,420,042 - Psest_1319 0.46 -0.7
1,420,042 - Psest_1319 0.46 +2.3
1,420,042 - Psest_1319 0.46 +0.2
1,420,042 - Psest_1319 0.46 +1.0
1,420,042 - Psest_1319 0.46 -0.2
1,420,191 - Psest_1319 0.64 +0.7
1,420,191 - Psest_1319 0.64 +0.7
1,420,433 - -0.3
1,420,729 + Psest_1320 0.23 -1.1
1,420,735 + Psest_1320 0.24 -1.7
1,420,735 + Psest_1320 0.24 -0.5
1,420,736 - Psest_1320 0.24 +0.7
1,420,736 - Psest_1320 0.24 -0.7
1,420,736 - Psest_1320 0.24 +0.2
1,420,903 + Psest_1320 0.43 -0.7
1,420,904 - Psest_1320 0.44 +0.7
1,420,904 - Psest_1320 0.44 +0.5
1,421,076 + Psest_1320 0.64 +0.2
1,421,076 + Psest_1320 0.64 +0.1
1,421,185 + Psest_1320 0.77 +0.4
1,421,185 + Psest_1320 0.77 -1.5
1,421,237 - Psest_1320 0.83 +0.1
1,421,333 + +0.7
1,421,333 + +0.3
1,421,333 + -1.3
1,421,334 - +0.1
1,421,405 - +0.3
1,421,427 + +0.1
1,421,427 + -1.7
1,421,427 + -0.0

Or see this region's nucleotide sequence