Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16810 and HMPREF1058_RS16805 are separated by 362 nucleotides HMPREF1058_RS16805 and HMPREF1058_RS16800 are separated by 147 nucleotides
HMPREF1058_RS16810: HMPREF1058_RS16810 - hypothetical protein, at 590,504 to 590,878
_RS16810
HMPREF1058_RS16805: HMPREF1058_RS16805 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 591,241 to 591,819
_RS16805
HMPREF1058_RS16800: HMPREF1058_RS16800 - RagB/SusD family nutrient uptake outer membrane protein, at 591,967 to 593,409
_RS16800
Position (kb) 591
592 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 590.261 kb on + strand at 590.267 kb on - strand at 590.270 kb on - strand at 590.273 kb on - strand at 590.279 kb on - strand at 590.279 kb on - strand at 590.426 kb on - strand at 590.506 kb on - strand at 590.506 kb on - strand at 590.529 kb on + strand at 590.529 kb on + strand at 590.530 kb on - strand at 590.530 kb on - strand at 590.530 kb on - strand at 590.557 kb on + strand, within HMPREF1058_RS16810 at 590.558 kb on - strand, within HMPREF1058_RS16810 at 590.558 kb on - strand, within HMPREF1058_RS16810 at 590.578 kb on - strand, within HMPREF1058_RS16810 at 590.578 kb on - strand, within HMPREF1058_RS16810 at 590.605 kb on + strand, within HMPREF1058_RS16810 at 590.606 kb on - strand, within HMPREF1058_RS16810 at 590.717 kb on - strand, within HMPREF1058_RS16810 at 590.786 kb on + strand, within HMPREF1058_RS16810 at 590.787 kb on - strand, within HMPREF1058_RS16810 at 590.830 kb on + strand, within HMPREF1058_RS16810 at 590.843 kb on + strand at 590.867 kb on + strand at 590.919 kb on - strand at 590.926 kb on - strand at 590.936 kb on + strand at 590.937 kb on - strand at 590.947 kb on + strand at 590.950 kb on + strand at 590.951 kb on - strand at 591.112 kb on + strand at 591.115 kb on - strand at 591.141 kb on + strand at 591.150 kb on - strand at 591.219 kb on + strand at 591.232 kb on + strand at 591.268 kb on + strand at 591.268 kb on + strand at 591.269 kb on - strand at 591.277 kb on + strand at 591.324 kb on - strand, within HMPREF1058_RS16805 at 591.387 kb on - strand, within HMPREF1058_RS16805 at 591.454 kb on - strand, within HMPREF1058_RS16805 at 591.480 kb on + strand, within HMPREF1058_RS16805 at 591.480 kb on + strand, within HMPREF1058_RS16805 at 591.486 kb on + strand, within HMPREF1058_RS16805 at 591.523 kb on - strand, within HMPREF1058_RS16805 at 591.575 kb on - strand, within HMPREF1058_RS16805 at 591.584 kb on + strand, within HMPREF1058_RS16805 at 591.640 kb on - strand, within HMPREF1058_RS16805 at 591.668 kb on + strand, within HMPREF1058_RS16805 at 591.710 kb on + strand, within HMPREF1058_RS16805 at 591.781 kb on - strand at 591.818 kb on - strand at 591.888 kb on + strand at 591.935 kb on - strand at 591.940 kb on - strand at 591.968 kb on + strand at 592.066 kb on - strand at 592.066 kb on - strand at 592.068 kb on - strand at 592.068 kb on - strand at 592.106 kb on + strand at 592.132 kb on - strand, within HMPREF1058_RS16800 at 592.134 kb on - strand, within HMPREF1058_RS16800 at 592.142 kb on + strand, within HMPREF1058_RS16800 at 592.142 kb on + strand, within HMPREF1058_RS16800 at 592.143 kb on - strand, within HMPREF1058_RS16800 at 592.143 kb on - strand, within HMPREF1058_RS16800 at 592.144 kb on + strand, within HMPREF1058_RS16800 at 592.144 kb on + strand, within HMPREF1058_RS16800 at 592.144 kb on + strand, within HMPREF1058_RS16800 at 592.144 kb on + strand, within HMPREF1058_RS16800 at 592.145 kb on - strand, within HMPREF1058_RS16800 at 592.164 kb on - strand, within HMPREF1058_RS16800 at 592.177 kb on - strand, within HMPREF1058_RS16800 at 592.248 kb on + strand, within HMPREF1058_RS16800 at 592.267 kb on - strand at 592.290 kb on + strand, within HMPREF1058_RS16800 at 592.291 kb on - strand, within HMPREF1058_RS16800 at 592.335 kb on + strand, within HMPREF1058_RS16800 at 592.335 kb on + strand, within HMPREF1058_RS16800 at 592.336 kb on - strand, within HMPREF1058_RS16800 at 592.341 kb on - strand, within HMPREF1058_RS16800 at 592.360 kb on - strand, within HMPREF1058_RS16800 at 592.369 kb on - strand, within HMPREF1058_RS16800 at 592.386 kb on - strand at 592.541 kb on + strand, within HMPREF1058_RS16800 at 592.547 kb on + strand, within HMPREF1058_RS16800 at 592.548 kb on - strand, within HMPREF1058_RS16800 at 592.548 kb on - strand, within HMPREF1058_RS16800 at 592.554 kb on - strand, within HMPREF1058_RS16800 at 592.566 kb on + strand, within HMPREF1058_RS16800 at 592.600 kb on - strand, within HMPREF1058_RS16800 at 592.649 kb on - strand, within HMPREF1058_RS16800 at 592.712 kb on + strand, within HMPREF1058_RS16800 at 592.730 kb on + strand, within HMPREF1058_RS16800 at 592.730 kb on + strand, within HMPREF1058_RS16800 at 592.730 kb on + strand, within HMPREF1058_RS16800 at 592.746 kb on + strand, within HMPREF1058_RS16800 at 592.746 kb on + strand, within HMPREF1058_RS16800 at 592.747 kb on - strand, within HMPREF1058_RS16800 at 592.792 kb on + strand, within HMPREF1058_RS16800
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 remove 590,261 + -1.2 590,267 - -2.5 590,270 - +0.3 590,273 - +0.9 590,279 - +0.8 590,279 - +0.2 590,426 - -3.5 590,506 - -0.5 590,506 - -1.2 590,529 + -0.3 590,529 + +0.1 590,530 - +2.4 590,530 - +0.6 590,530 - -0.8 590,557 + HMPREF1058_RS16810 0.14 +1.4 590,558 - HMPREF1058_RS16810 0.14 +2.0 590,558 - HMPREF1058_RS16810 0.14 +1.2 590,578 - HMPREF1058_RS16810 0.20 -3.5 590,578 - HMPREF1058_RS16810 0.20 +0.4 590,605 + HMPREF1058_RS16810 0.27 -1.1 590,606 - HMPREF1058_RS16810 0.27 +0.1 590,717 - HMPREF1058_RS16810 0.57 +0.6 590,786 + HMPREF1058_RS16810 0.75 +3.3 590,787 - HMPREF1058_RS16810 0.75 +0.5 590,830 + HMPREF1058_RS16810 0.87 -0.9 590,843 + +0.2 590,867 + +0.9 590,919 - -1.0 590,926 - +1.1 590,936 + +6.3 590,937 - -0.6 590,947 + +0.6 590,950 + -3.3 590,951 - +2.8 591,112 + -2.8 591,115 - -0.5 591,141 + +0.4 591,150 - +0.4 591,219 + +0.0 591,232 + -4.2 591,268 + +0.8 591,268 + -0.7 591,269 - -2.4 591,277 + -1.9 591,324 - HMPREF1058_RS16805 0.14 -1.3 591,387 - HMPREF1058_RS16805 0.25 -0.8 591,454 - HMPREF1058_RS16805 0.37 -1.5 591,480 + HMPREF1058_RS16805 0.41 -0.2 591,480 + HMPREF1058_RS16805 0.41 -3.0 591,486 + HMPREF1058_RS16805 0.42 -0.2 591,523 - HMPREF1058_RS16805 0.49 -2.5 591,575 - HMPREF1058_RS16805 0.58 -3.5 591,584 + HMPREF1058_RS16805 0.59 -1.2 591,640 - HMPREF1058_RS16805 0.69 +0.5 591,668 + HMPREF1058_RS16805 0.74 -3.5 591,710 + HMPREF1058_RS16805 0.81 -4.5 591,781 - -1.2 591,818 - -1.0 591,888 + +0.4 591,935 - +1.4 591,940 - -0.8 591,968 + -1.1 592,066 - +1.7 592,066 - -1.1 592,068 - +0.6 592,068 - +0.1 592,106 + -1.2 592,132 - HMPREF1058_RS16800 0.11 +0.2 592,134 - HMPREF1058_RS16800 0.12 +0.1 592,142 + HMPREF1058_RS16800 0.12 -0.5 592,142 + HMPREF1058_RS16800 0.12 +0.8 592,143 - HMPREF1058_RS16800 0.12 -0.1 592,143 - HMPREF1058_RS16800 0.12 +1.2 592,144 + HMPREF1058_RS16800 0.12 +1.2 592,144 + HMPREF1058_RS16800 0.12 -2.0 592,144 + HMPREF1058_RS16800 0.12 +1.4 592,144 + HMPREF1058_RS16800 0.12 -0.2 592,145 - HMPREF1058_RS16800 0.12 -0.6 592,164 - HMPREF1058_RS16800 0.14 -0.0 592,177 - HMPREF1058_RS16800 0.15 +1.8 592,248 + HMPREF1058_RS16800 0.19 +3.9 592,267 - -0.2 592,290 + HMPREF1058_RS16800 0.22 +1.2 592,291 - HMPREF1058_RS16800 0.22 -2.0 592,335 + HMPREF1058_RS16800 0.26 +1.1 592,335 + HMPREF1058_RS16800 0.26 -2.0 592,336 - HMPREF1058_RS16800 0.26 +1.0 592,341 - HMPREF1058_RS16800 0.26 +3.0 592,360 - HMPREF1058_RS16800 0.27 -1.8 592,369 - HMPREF1058_RS16800 0.28 +0.4 592,386 - -1.5 592,541 + HMPREF1058_RS16800 0.40 +0.7 592,547 + HMPREF1058_RS16800 0.40 -0.2 592,548 - HMPREF1058_RS16800 0.40 +0.8 592,548 - HMPREF1058_RS16800 0.40 -2.4 592,554 - HMPREF1058_RS16800 0.41 -0.3 592,566 + HMPREF1058_RS16800 0.42 +0.2 592,600 - HMPREF1058_RS16800 0.44 +0.5 592,649 - HMPREF1058_RS16800 0.47 -2.5 592,712 + HMPREF1058_RS16800 0.52 +0.2 592,730 + HMPREF1058_RS16800 0.53 -3.7 592,730 + HMPREF1058_RS16800 0.53 +0.1 592,730 + HMPREF1058_RS16800 0.53 -0.2 592,746 + HMPREF1058_RS16800 0.54 -1.2 592,746 + HMPREF1058_RS16800 0.54 +0.8 592,747 - HMPREF1058_RS16800 0.54 -0.8 592,792 + HMPREF1058_RS16800 0.57 +0.5
Or see this region's nucleotide sequence