Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10655

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10665 and HMPREF1058_RS10660 are separated by 25 nucleotidesHMPREF1058_RS10660 and HMPREF1058_RS10655 are separated by 108 nucleotidesHMPREF1058_RS10655 and HMPREF1058_RS10650 are separated by 1 nucleotidesHMPREF1058_RS10650 and HMPREF1058_RS10645 are separated by 12 nucleotides HMPREF1058_RS10665: HMPREF1058_RS10665 - hypothetical protein, at 607,375 to 607,659 _RS10665 HMPREF1058_RS10660: HMPREF1058_RS10660 - DUF1573 domain-containing protein, at 607,685 to 608,422 _RS10660 HMPREF1058_RS10655: HMPREF1058_RS10655 - hydroxymyristoyl-ACP dehydratase, at 608,531 to 608,911 _RS10655 HMPREF1058_RS10650: HMPREF1058_RS10650 - hypothetical protein, at 608,913 to 609,455 _RS10650 HMPREF1058_RS10645: HMPREF1058_RS10645 - ATP-binding protein, at 609,468 to 611,042 _RS10645 Position (kb) 608 609Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 607.576 kb on + strand, within HMPREF1058_RS10665at 607.576 kb on + strand, within HMPREF1058_RS10665at 607.577 kb on - strand, within HMPREF1058_RS10665at 607.730 kb on + strandat 607.730 kb on + strandat 607.841 kb on + strand, within HMPREF1058_RS10660at 607.849 kb on + strand, within HMPREF1058_RS10660at 607.849 kb on + strand, within HMPREF1058_RS10660at 607.881 kb on + strand, within HMPREF1058_RS10660at 607.888 kb on + strand, within HMPREF1058_RS10660at 607.911 kb on - strand, within HMPREF1058_RS10660at 608.040 kb on + strand, within HMPREF1058_RS10660at 608.040 kb on + strand, within HMPREF1058_RS10660at 608.061 kb on + strand, within HMPREF1058_RS10660at 608.061 kb on + strand, within HMPREF1058_RS10660at 608.062 kb on - strand, within HMPREF1058_RS10660at 608.062 kb on - strand, within HMPREF1058_RS10660at 608.062 kb on - strand, within HMPREF1058_RS10660at 608.063 kb on + strand, within HMPREF1058_RS10660at 608.063 kb on + strand, within HMPREF1058_RS10660at 608.068 kb on + strand, within HMPREF1058_RS10660at 608.103 kb on - strand, within HMPREF1058_RS10660at 608.103 kb on - strand, within HMPREF1058_RS10660at 608.122 kb on - strand, within HMPREF1058_RS10660at 608.192 kb on - strand, within HMPREF1058_RS10660at 608.192 kb on - strand, within HMPREF1058_RS10660at 608.200 kb on - strand, within HMPREF1058_RS10660at 608.272 kb on + strand, within HMPREF1058_RS10660at 608.276 kb on - strand, within HMPREF1058_RS10660at 608.276 kb on - strand, within HMPREF1058_RS10660at 608.280 kb on - strand, within HMPREF1058_RS10660at 608.314 kb on + strand, within HMPREF1058_RS10660at 608.315 kb on - strand, within HMPREF1058_RS10660at 608.315 kb on - strand, within HMPREF1058_RS10660at 608.315 kb on - strand, within HMPREF1058_RS10660at 608.315 kb on - strand, within HMPREF1058_RS10660at 608.370 kb on + strandat 608.371 kb on - strandat 608.384 kb on + strandat 608.391 kb on + strandat 608.392 kb on - strandat 608.421 kb on + strandat 608.423 kb on - strandat 608.435 kb on + strandat 608.539 kb on - strandat 608.542 kb on + strandat 608.543 kb on - strandat 608.543 kb on - strandat 608.636 kb on + strand, within HMPREF1058_RS10655at 608.649 kb on - strand, within HMPREF1058_RS10655at 608.649 kb on - strand, within HMPREF1058_RS10655at 608.711 kb on + strand, within HMPREF1058_RS10655at 608.711 kb on + strand, within HMPREF1058_RS10655at 608.716 kb on - strand, within HMPREF1058_RS10655at 608.759 kb on + strand, within HMPREF1058_RS10655at 608.759 kb on + strand, within HMPREF1058_RS10655at 608.770 kb on + strand, within HMPREF1058_RS10655at 608.771 kb on - strand, within HMPREF1058_RS10655at 608.771 kb on - strand, within HMPREF1058_RS10655at 608.841 kb on - strand, within HMPREF1058_RS10655at 608.847 kb on - strand, within HMPREF1058_RS10655at 608.911 kb on + strandat 608.925 kb on + strandat 608.926 kb on - strandat 608.926 kb on - strandat 609.068 kb on + strand, within HMPREF1058_RS10650at 609.081 kb on - strand, within HMPREF1058_RS10650at 609.177 kb on + strand, within HMPREF1058_RS10650at 609.180 kb on + strand, within HMPREF1058_RS10650at 609.181 kb on - strand, within HMPREF1058_RS10650at 609.181 kb on - strand, within HMPREF1058_RS10650at 609.230 kb on - strand, within HMPREF1058_RS10650at 609.240 kb on + strand, within HMPREF1058_RS10650at 609.241 kb on - strand, within HMPREF1058_RS10650at 609.470 kb on - strandat 609.499 kb on - strandat 609.574 kb on + strandat 609.588 kb on + strandat 609.640 kb on + strand, within HMPREF1058_RS10645at 609.646 kb on + strand, within HMPREF1058_RS10645

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8
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607,576 + HMPREF1058_RS10665 0.71 -0.2
607,576 + HMPREF1058_RS10665 0.71 +0.3
607,577 - HMPREF1058_RS10665 0.71 -1.9
607,730 + -0.2
607,730 + +1.4
607,841 + HMPREF1058_RS10660 0.21 +2.2
607,849 + HMPREF1058_RS10660 0.22 +0.3
607,849 + HMPREF1058_RS10660 0.22 +0.5
607,881 + HMPREF1058_RS10660 0.27 -2.5
607,888 + HMPREF1058_RS10660 0.28 +2.2
607,911 - HMPREF1058_RS10660 0.31 -4.6
608,040 + HMPREF1058_RS10660 0.48 -3.3
608,040 + HMPREF1058_RS10660 0.48 -0.4
608,061 + HMPREF1058_RS10660 0.51 +0.2
608,061 + HMPREF1058_RS10660 0.51 +0.6
608,062 - HMPREF1058_RS10660 0.51 +1.3
608,062 - HMPREF1058_RS10660 0.51 +1.9
608,062 - HMPREF1058_RS10660 0.51 -0.9
608,063 + HMPREF1058_RS10660 0.51 +1.3
608,063 + HMPREF1058_RS10660 0.51 +0.8
608,068 + HMPREF1058_RS10660 0.52 +2.3
608,103 - HMPREF1058_RS10660 0.57 -1.0
608,103 - HMPREF1058_RS10660 0.57 +0.6
608,122 - HMPREF1058_RS10660 0.59 +0.4
608,192 - HMPREF1058_RS10660 0.69 -1.8
608,192 - HMPREF1058_RS10660 0.69 -0.3
608,200 - HMPREF1058_RS10660 0.70 -1.7
608,272 + HMPREF1058_RS10660 0.80 -0.0
608,276 - HMPREF1058_RS10660 0.80 +1.1
608,276 - HMPREF1058_RS10660 0.80 +0.6
608,280 - HMPREF1058_RS10660 0.81 -3.3
608,314 + HMPREF1058_RS10660 0.85 -1.2
608,315 - HMPREF1058_RS10660 0.85 +1.2
608,315 - HMPREF1058_RS10660 0.85 -1.9
608,315 - HMPREF1058_RS10660 0.85 +0.4
608,315 - HMPREF1058_RS10660 0.85 +1.2
608,370 + +0.1
608,371 - -1.9
608,384 + +0.1
608,391 + +1.9
608,392 - +1.7
608,421 + +3.0
608,423 - +1.3
608,435 + -0.5
608,539 - +0.3
608,542 + -0.8
608,543 - +0.6
608,543 - +0.9
608,636 + HMPREF1058_RS10655 0.28 +0.8
608,649 - HMPREF1058_RS10655 0.31 +0.2
608,649 - HMPREF1058_RS10655 0.31 +1.6
608,711 + HMPREF1058_RS10655 0.47 +1.0
608,711 + HMPREF1058_RS10655 0.47 +0.3
608,716 - HMPREF1058_RS10655 0.49 -0.9
608,759 + HMPREF1058_RS10655 0.60 -2.0
608,759 + HMPREF1058_RS10655 0.60 +1.0
608,770 + HMPREF1058_RS10655 0.63 -1.9
608,771 - HMPREF1058_RS10655 0.63 +1.6
608,771 - HMPREF1058_RS10655 0.63 +0.0
608,841 - HMPREF1058_RS10655 0.81 -3.5
608,847 - HMPREF1058_RS10655 0.83 +1.4
608,911 + +1.5
608,925 + +1.4
608,926 - +0.1
608,926 - +0.5
609,068 + HMPREF1058_RS10650 0.29 +0.9
609,081 - HMPREF1058_RS10650 0.31 -2.8
609,177 + HMPREF1058_RS10650 0.49 +0.7
609,180 + HMPREF1058_RS10650 0.49 +0.1
609,181 - HMPREF1058_RS10650 0.49 +0.6
609,181 - HMPREF1058_RS10650 0.49 -0.9
609,230 - HMPREF1058_RS10650 0.58 -4.1
609,240 + HMPREF1058_RS10650 0.60 -2.2
609,241 - HMPREF1058_RS10650 0.60 -2.6
609,470 - +0.9
609,499 - -0.8
609,574 + +0.3
609,588 + -0.0
609,640 + HMPREF1058_RS10645 0.11 -1.2
609,646 + HMPREF1058_RS10645 0.11 +0.5

Or see this region's nucleotide sequence