Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08920 and HMPREF1058_RS08915 are separated by 7 nucleotides HMPREF1058_RS08915 and HMPREF1058_RS08910 are separated by 148 nucleotides
HMPREF1058_RS08920: HMPREF1058_RS08920 - lytic transglycosylase domain-containing protein, at 993,999 to 994,997
_RS08920
HMPREF1058_RS08915: HMPREF1058_RS08915 - AraC family transcriptional regulator, at 995,005 to 995,925
_RS08915
HMPREF1058_RS08910: HMPREF1058_RS08910 - response regulator, at 996,074 to 1,000,234
_RS08910
Position (kb) 995
996 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 994.005 kb on + strand at 994.005 kb on + strand at 994.005 kb on + strand at 994.048 kb on + strand at 994.049 kb on - strand at 994.049 kb on - strand at 994.143 kb on + strand, within HMPREF1058_RS08920 at 994.222 kb on + strand, within HMPREF1058_RS08920 at 994.411 kb on + strand, within HMPREF1058_RS08920 at 994.441 kb on + strand, within HMPREF1058_RS08920 at 994.442 kb on - strand, within HMPREF1058_RS08920 at 994.610 kb on + strand, within HMPREF1058_RS08920 at 994.614 kb on - strand, within HMPREF1058_RS08920 at 994.620 kb on + strand, within HMPREF1058_RS08920 at 994.621 kb on - strand, within HMPREF1058_RS08920 at 994.621 kb on - strand, within HMPREF1058_RS08920 at 994.637 kb on + strand, within HMPREF1058_RS08920 at 994.678 kb on - strand, within HMPREF1058_RS08920 at 994.733 kb on + strand, within HMPREF1058_RS08920 at 994.734 kb on - strand, within HMPREF1058_RS08920 at 994.838 kb on + strand, within HMPREF1058_RS08920 at 994.839 kb on - strand, within HMPREF1058_RS08920 at 994.860 kb on - strand, within HMPREF1058_RS08920 at 994.987 kb on - strand at 995.055 kb on - strand at 995.086 kb on - strand at 995.115 kb on + strand, within HMPREF1058_RS08915 at 995.134 kb on + strand, within HMPREF1058_RS08915 at 995.134 kb on + strand, within HMPREF1058_RS08915 at 995.228 kb on + strand, within HMPREF1058_RS08915 at 995.296 kb on + strand, within HMPREF1058_RS08915 at 995.297 kb on - strand, within HMPREF1058_RS08915 at 995.370 kb on - strand, within HMPREF1058_RS08915 at 995.413 kb on + strand, within HMPREF1058_RS08915 at 995.433 kb on - strand, within HMPREF1058_RS08915 at 995.433 kb on - strand, within HMPREF1058_RS08915 at 995.591 kb on + strand, within HMPREF1058_RS08915 at 995.592 kb on - strand, within HMPREF1058_RS08915 at 995.627 kb on + strand, within HMPREF1058_RS08915 at 995.627 kb on + strand, within HMPREF1058_RS08915 at 995.627 kb on + strand, within HMPREF1058_RS08915 at 995.628 kb on - strand, within HMPREF1058_RS08915 at 995.628 kb on - strand, within HMPREF1058_RS08915 at 995.727 kb on + strand, within HMPREF1058_RS08915 at 995.729 kb on + strand, within HMPREF1058_RS08915 at 995.729 kb on + strand, within HMPREF1058_RS08915 at 995.729 kb on + strand, within HMPREF1058_RS08915 at 995.729 kb on + strand, within HMPREF1058_RS08915 at 995.729 kb on + strand, within HMPREF1058_RS08915 at 995.730 kb on - strand, within HMPREF1058_RS08915 at 995.730 kb on - strand, within HMPREF1058_RS08915 at 995.730 kb on - strand, within HMPREF1058_RS08915 at 995.730 kb on - strand, within HMPREF1058_RS08915 at 995.731 kb on + strand, within HMPREF1058_RS08915 at 995.732 kb on - strand, within HMPREF1058_RS08915 at 995.732 kb on - strand, within HMPREF1058_RS08915 at 995.887 kb on + strand at 995.887 kb on + strand at 995.888 kb on - strand at 995.918 kb on + strand at 995.919 kb on - strand at 995.919 kb on - strand at 996.039 kb on - strand at 996.080 kb on + strand at 996.081 kb on - strand at 996.136 kb on + strand at 996.136 kb on + strand at 996.165 kb on - strand at 996.166 kb on + strand at 996.221 kb on - strand at 996.229 kb on + strand at 996.229 kb on + strand at 996.229 kb on + strand at 996.311 kb on + strand at 996.311 kb on + strand at 996.311 kb on + strand at 996.311 kb on + strand at 996.312 kb on - strand at 996.313 kb on + strand at 996.313 kb on + strand at 996.313 kb on + strand at 996.314 kb on - strand at 996.314 kb on - strand at 996.315 kb on + strand at 996.316 kb on - strand at 996.316 kb on - strand at 996.316 kb on - strand at 996.316 kb on - strand at 996.330 kb on - strand at 996.361 kb on + strand at 996.362 kb on - strand at 996.369 kb on + strand at 996.370 kb on - strand at 996.371 kb on + strand at 996.422 kb on - strand at 996.456 kb on + strand at 996.477 kb on - strand at 996.514 kb on - strand, within HMPREF1058_RS08910 at 996.543 kb on + strand, within HMPREF1058_RS08910 at 996.626 kb on - strand, within HMPREF1058_RS08910 at 996.688 kb on - strand, within HMPREF1058_RS08910 at 996.724 kb on + strand, within HMPREF1058_RS08910 at 996.724 kb on + strand, within HMPREF1058_RS08910 at 996.725 kb on - strand, within HMPREF1058_RS08910 at 996.743 kb on + strand, within HMPREF1058_RS08910 at 996.743 kb on + strand, within HMPREF1058_RS08910 at 996.743 kb on + strand, within HMPREF1058_RS08910 at 996.744 kb on - strand, within HMPREF1058_RS08910 at 996.748 kb on + strand, within HMPREF1058_RS08910 at 996.748 kb on + strand, within HMPREF1058_RS08910 at 996.749 kb on - strand, within HMPREF1058_RS08910 at 996.752 kb on + strand, within HMPREF1058_RS08910 at 996.753 kb on - strand, within HMPREF1058_RS08910 at 996.812 kb on - strand, within HMPREF1058_RS08910
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 remove 994,005 + -0.7 994,005 + +0.8 994,005 + -1.3 994,048 + -1.1 994,049 - -4.2 994,049 - -3.2 994,143 + HMPREF1058_RS08920 0.14 +3.9 994,222 + HMPREF1058_RS08920 0.22 -0.7 994,411 + HMPREF1058_RS08920 0.41 -1.7 994,441 + HMPREF1058_RS08920 0.44 -1.7 994,442 - HMPREF1058_RS08920 0.44 +0.2 994,610 + HMPREF1058_RS08920 0.61 +0.7 994,614 - HMPREF1058_RS08920 0.62 +0.0 994,620 + HMPREF1058_RS08920 0.62 -0.3 994,621 - HMPREF1058_RS08920 0.62 -0.8 994,621 - HMPREF1058_RS08920 0.62 -2.9 994,637 + HMPREF1058_RS08920 0.64 +1.3 994,678 - HMPREF1058_RS08920 0.68 +0.8 994,733 + HMPREF1058_RS08920 0.73 -0.4 994,734 - HMPREF1058_RS08920 0.74 +1.8 994,838 + HMPREF1058_RS08920 0.84 +2.0 994,839 - HMPREF1058_RS08920 0.84 +0.0 994,860 - HMPREF1058_RS08920 0.86 +0.2 994,987 - -0.3 995,055 - -2.0 995,086 - +0.4 995,115 + HMPREF1058_RS08915 0.12 +0.1 995,134 + HMPREF1058_RS08915 0.14 +1.3 995,134 + HMPREF1058_RS08915 0.14 -1.7 995,228 + HMPREF1058_RS08915 0.24 -2.4 995,296 + HMPREF1058_RS08915 0.32 -0.4 995,297 - HMPREF1058_RS08915 0.32 -1.8 995,370 - HMPREF1058_RS08915 0.40 -0.3 995,413 + HMPREF1058_RS08915 0.44 -0.7 995,433 - HMPREF1058_RS08915 0.46 -0.7 995,433 - HMPREF1058_RS08915 0.46 -0.1 995,591 + HMPREF1058_RS08915 0.64 -0.0 995,592 - HMPREF1058_RS08915 0.64 -2.3 995,627 + HMPREF1058_RS08915 0.68 +1.0 995,627 + HMPREF1058_RS08915 0.68 -0.9 995,627 + HMPREF1058_RS08915 0.68 +0.7 995,628 - HMPREF1058_RS08915 0.68 +1.1 995,628 - HMPREF1058_RS08915 0.68 -0.5 995,727 + HMPREF1058_RS08915 0.78 -0.9 995,729 + HMPREF1058_RS08915 0.79 -2.1 995,729 + HMPREF1058_RS08915 0.79 -3.5 995,729 + HMPREF1058_RS08915 0.79 -1.5 995,729 + HMPREF1058_RS08915 0.79 -0.8 995,729 + HMPREF1058_RS08915 0.79 -0.7 995,730 - HMPREF1058_RS08915 0.79 -0.2 995,730 - HMPREF1058_RS08915 0.79 +0.1 995,730 - HMPREF1058_RS08915 0.79 +0.0 995,730 - HMPREF1058_RS08915 0.79 -1.1 995,731 + HMPREF1058_RS08915 0.79 -0.9 995,732 - HMPREF1058_RS08915 0.79 +0.3 995,732 - HMPREF1058_RS08915 0.79 -0.1 995,887 + -1.9 995,887 + +0.3 995,888 - +0.9 995,918 + +0.2 995,919 - +0.6 995,919 - -0.9 996,039 - +0.5 996,080 + +1.7 996,081 - +0.3 996,136 + -0.3 996,136 + +1.2 996,165 - +0.4 996,166 + -3.9 996,221 - +0.0 996,229 + +1.4 996,229 + -2.0 996,229 + -0.3 996,311 + -1.6 996,311 + +1.9 996,311 + -2.2 996,311 + +2.7 996,312 - +1.2 996,313 + +0.7 996,313 + +1.7 996,313 + -1.7 996,314 - +0.9 996,314 - +0.3 996,315 + -2.1 996,316 - -1.2 996,316 - +2.3 996,316 - -3.1 996,316 - +0.7 996,330 - -0.1 996,361 + +0.5 996,362 - +1.4 996,369 + +0.5 996,370 - +1.6 996,371 + +3.7 996,422 - +1.2 996,456 + -0.0 996,477 - +1.4 996,514 - HMPREF1058_RS08910 0.11 +0.4 996,543 + HMPREF1058_RS08910 0.11 +0.4 996,626 - HMPREF1058_RS08910 0.13 -0.1 996,688 - HMPREF1058_RS08910 0.15 -0.6 996,724 + HMPREF1058_RS08910 0.16 +1.3 996,724 + HMPREF1058_RS08910 0.16 -0.1 996,725 - HMPREF1058_RS08910 0.16 +0.2 996,743 + HMPREF1058_RS08910 0.16 -0.6 996,743 + HMPREF1058_RS08910 0.16 +1.4 996,743 + HMPREF1058_RS08910 0.16 -0.1 996,744 - HMPREF1058_RS08910 0.16 +1.4 996,748 + HMPREF1058_RS08910 0.16 +0.7 996,748 + HMPREF1058_RS08910 0.16 +0.9 996,749 - HMPREF1058_RS08910 0.16 +0.8 996,752 + HMPREF1058_RS08910 0.16 +0.9 996,753 - HMPREF1058_RS08910 0.16 +0.3 996,812 - HMPREF1058_RS08910 0.18 -0.0
Or see this region's nucleotide sequence