Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06990 and HMPREF1058_RS06985 are separated by 300 nucleotides HMPREF1058_RS06985 and HMPREF1058_RS06980 are separated by 531 nucleotides
HMPREF1058_RS06990: HMPREF1058_RS06990 - family 10 glycosylhydrolase, at 340,755 to 342,794
_RS06990
HMPREF1058_RS06985: HMPREF1058_RS06985 - glycosyltransferase family 2 protein, at 343,095 to 343,913
_RS06985
HMPREF1058_RS06980: HMPREF1058_RS06980 - sugar transferase, at 344,445 to 345,074
_RS06980
Position (kb) 343
344 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 342.144 kb on + strand, within HMPREF1058_RS06990 at 342.192 kb on + strand, within HMPREF1058_RS06990 at 342.192 kb on + strand, within HMPREF1058_RS06990 at 342.192 kb on + strand, within HMPREF1058_RS06990 at 342.211 kb on + strand, within HMPREF1058_RS06990 at 342.211 kb on + strand, within HMPREF1058_RS06990 at 342.240 kb on + strand, within HMPREF1058_RS06990 at 342.248 kb on - strand, within HMPREF1058_RS06990 at 342.273 kb on + strand, within HMPREF1058_RS06990 at 342.280 kb on - strand, within HMPREF1058_RS06990 at 342.280 kb on - strand, within HMPREF1058_RS06990 at 342.280 kb on - strand, within HMPREF1058_RS06990 at 342.285 kb on + strand, within HMPREF1058_RS06990 at 342.312 kb on - strand, within HMPREF1058_RS06990 at 342.318 kb on - strand, within HMPREF1058_RS06990 at 342.440 kb on + strand, within HMPREF1058_RS06990 at 342.440 kb on + strand, within HMPREF1058_RS06990 at 342.485 kb on + strand, within HMPREF1058_RS06990 at 342.485 kb on + strand, within HMPREF1058_RS06990 at 342.528 kb on + strand, within HMPREF1058_RS06990 at 342.529 kb on - strand, within HMPREF1058_RS06990 at 342.529 kb on - strand, within HMPREF1058_RS06990 at 342.546 kb on - strand, within HMPREF1058_RS06990 at 342.555 kb on + strand, within HMPREF1058_RS06990 at 342.558 kb on + strand, within HMPREF1058_RS06990 at 342.630 kb on + strand at 342.691 kb on - strand at 342.763 kb on - strand at 342.806 kb on + strand at 342.814 kb on + strand at 342.815 kb on - strand at 342.817 kb on - strand at 342.922 kb on + strand at 343.067 kb on - strand at 343.109 kb on + strand at 343.109 kb on + strand at 343.109 kb on + strand at 343.119 kb on + strand at 343.120 kb on - strand at 343.183 kb on + strand, within HMPREF1058_RS06985 at 343.186 kb on + strand, within HMPREF1058_RS06985 at 343.187 kb on - strand, within HMPREF1058_RS06985 at 343.188 kb on + strand, within HMPREF1058_RS06985 at 343.232 kb on + strand, within HMPREF1058_RS06985 at 343.255 kb on - strand, within HMPREF1058_RS06985 at 343.260 kb on + strand, within HMPREF1058_RS06985 at 343.298 kb on - strand, within HMPREF1058_RS06985 at 343.298 kb on - strand, within HMPREF1058_RS06985 at 343.298 kb on - strand, within HMPREF1058_RS06985 at 343.301 kb on + strand, within HMPREF1058_RS06985 at 343.301 kb on + strand, within HMPREF1058_RS06985 at 343.356 kb on - strand, within HMPREF1058_RS06985 at 343.477 kb on + strand, within HMPREF1058_RS06985 at 343.617 kb on - strand, within HMPREF1058_RS06985 at 343.677 kb on + strand, within HMPREF1058_RS06985 at 343.677 kb on + strand, within HMPREF1058_RS06985 at 343.678 kb on - strand, within HMPREF1058_RS06985 at 343.696 kb on + strand, within HMPREF1058_RS06985 at 343.697 kb on - strand, within HMPREF1058_RS06985 at 343.732 kb on - strand, within HMPREF1058_RS06985 at 343.801 kb on - strand, within HMPREF1058_RS06985 at 343.925 kb on + strand at 344.019 kb on - strand at 344.084 kb on - strand at 344.094 kb on - strand at 344.098 kb on - strand at 344.106 kb on + strand at 344.106 kb on + strand at 344.107 kb on - strand at 344.269 kb on - strand at 344.292 kb on - strand at 344.311 kb on + strand at 344.368 kb on - strand at 344.410 kb on + strand at 344.528 kb on - strand, within HMPREF1058_RS06980 at 344.652 kb on + strand, within HMPREF1058_RS06980 at 344.655 kb on - strand, within HMPREF1058_RS06980 at 344.658 kb on + strand, within HMPREF1058_RS06980 at 344.658 kb on + strand, within HMPREF1058_RS06980 at 344.659 kb on - strand, within HMPREF1058_RS06980 at 344.659 kb on - strand, within HMPREF1058_RS06980 at 344.659 kb on - strand, within HMPREF1058_RS06980 at 344.659 kb on - strand, within HMPREF1058_RS06980
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 remove 342,144 + HMPREF1058_RS06990 0.68 -0.1 342,192 + HMPREF1058_RS06990 0.70 -2.5 342,192 + HMPREF1058_RS06990 0.70 +1.0 342,192 + HMPREF1058_RS06990 0.70 +1.0 342,211 + HMPREF1058_RS06990 0.71 +0.7 342,211 + HMPREF1058_RS06990 0.71 +0.6 342,240 + HMPREF1058_RS06990 0.73 +0.6 342,248 - HMPREF1058_RS06990 0.73 +1.6 342,273 + HMPREF1058_RS06990 0.74 +0.8 342,280 - HMPREF1058_RS06990 0.75 +1.7 342,280 - HMPREF1058_RS06990 0.75 +5.0 342,280 - HMPREF1058_RS06990 0.75 -0.8 342,285 + HMPREF1058_RS06990 0.75 +0.2 342,312 - HMPREF1058_RS06990 0.76 -1.5 342,318 - HMPREF1058_RS06990 0.77 +0.0 342,440 + HMPREF1058_RS06990 0.83 -2.7 342,440 + HMPREF1058_RS06990 0.83 -0.5 342,485 + HMPREF1058_RS06990 0.85 -0.9 342,485 + HMPREF1058_RS06990 0.85 +1.3 342,528 + HMPREF1058_RS06990 0.87 -0.8 342,529 - HMPREF1058_RS06990 0.87 -1.2 342,529 - HMPREF1058_RS06990 0.87 +1.7 342,546 - HMPREF1058_RS06990 0.88 -0.0 342,555 + HMPREF1058_RS06990 0.88 +0.5 342,558 + HMPREF1058_RS06990 0.88 -0.5 342,630 + -0.2 342,691 - +2.2 342,763 - -1.2 342,806 + -0.2 342,814 + +2.8 342,815 - -2.0 342,817 - -2.0 342,922 + -0.3 343,067 - +0.8 343,109 + +1.5 343,109 + -0.3 343,109 + -2.9 343,119 + +1.2 343,120 - +0.4 343,183 + HMPREF1058_RS06985 0.11 +0.1 343,186 + HMPREF1058_RS06985 0.11 -0.0 343,187 - HMPREF1058_RS06985 0.11 -2.5 343,188 + HMPREF1058_RS06985 0.11 +0.0 343,232 + HMPREF1058_RS06985 0.17 +0.1 343,255 - HMPREF1058_RS06985 0.20 -0.8 343,260 + HMPREF1058_RS06985 0.20 -1.2 343,298 - HMPREF1058_RS06985 0.25 -0.2 343,298 - HMPREF1058_RS06985 0.25 +1.7 343,298 - HMPREF1058_RS06985 0.25 -1.6 343,301 + HMPREF1058_RS06985 0.25 -0.5 343,301 + HMPREF1058_RS06985 0.25 +1.2 343,356 - HMPREF1058_RS06985 0.32 +1.4 343,477 + HMPREF1058_RS06985 0.47 +0.2 343,617 - HMPREF1058_RS06985 0.64 -1.2 343,677 + HMPREF1058_RS06985 0.71 -0.9 343,677 + HMPREF1058_RS06985 0.71 +0.2 343,678 - HMPREF1058_RS06985 0.71 -2.2 343,696 + HMPREF1058_RS06985 0.73 -4.1 343,697 - HMPREF1058_RS06985 0.74 +0.2 343,732 - HMPREF1058_RS06985 0.78 -0.5 343,801 - HMPREF1058_RS06985 0.86 -0.1 343,925 + -0.2 344,019 - -0.5 344,084 - +0.6 344,094 - +1.9 344,098 - -0.5 344,106 + +2.0 344,106 + +0.4 344,107 - -0.5 344,269 - +0.7 344,292 - -1.0 344,311 + +0.4 344,368 - +1.4 344,410 + -1.5 344,528 - HMPREF1058_RS06980 0.13 -0.2 344,652 + HMPREF1058_RS06980 0.33 +0.1 344,655 - HMPREF1058_RS06980 0.33 -0.5 344,658 + HMPREF1058_RS06980 0.34 -1.6 344,658 + HMPREF1058_RS06980 0.34 +0.8 344,659 - HMPREF1058_RS06980 0.34 +0.1 344,659 - HMPREF1058_RS06980 0.34 -1.4 344,659 - HMPREF1058_RS06980 0.34 +1.3 344,659 - HMPREF1058_RS06980 0.34 +0.2
Or see this region's nucleotide sequence