Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04795 and HMPREF1058_RS04790 are separated by 28 nucleotides HMPREF1058_RS04790 and HMPREF1058_RS04785 are separated by 31 nucleotides
HMPREF1058_RS04795: HMPREF1058_RS04795 - ankyrin repeat domain-containing protein, at 316,470 to 317,444
_RS04795
HMPREF1058_RS04790: HMPREF1058_RS04790 - DUF1266 domain-containing protein, at 317,473 to 318,510
_RS04790
HMPREF1058_RS04785: HMPREF1058_RS04785 - DUF1266 domain-containing protein, at 318,542 to 319,339
_RS04785
Position (kb) 317
318
319 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 316.723 kb on + strand, within HMPREF1058_RS04795 at 316.723 kb on + strand, within HMPREF1058_RS04795 at 316.724 kb on - strand, within HMPREF1058_RS04795 at 316.781 kb on + strand, within HMPREF1058_RS04795 at 316.782 kb on - strand, within HMPREF1058_RS04795 at 316.782 kb on - strand, within HMPREF1058_RS04795 at 316.809 kb on - strand, within HMPREF1058_RS04795 at 316.899 kb on - strand, within HMPREF1058_RS04795 at 317.016 kb on - strand, within HMPREF1058_RS04795 at 317.040 kb on - strand, within HMPREF1058_RS04795 at 317.169 kb on - strand, within HMPREF1058_RS04795 at 317.298 kb on - strand, within HMPREF1058_RS04795 at 317.301 kb on - strand, within HMPREF1058_RS04795 at 317.323 kb on + strand, within HMPREF1058_RS04795 at 317.377 kb on - strand at 317.451 kb on - strand at 317.455 kb on + strand at 317.456 kb on - strand at 317.746 kb on + strand, within HMPREF1058_RS04790 at 317.747 kb on - strand, within HMPREF1058_RS04790 at 317.932 kb on + strand, within HMPREF1058_RS04790 at 317.933 kb on - strand, within HMPREF1058_RS04790 at 318.031 kb on - strand, within HMPREF1058_RS04790 at 318.031 kb on - strand, within HMPREF1058_RS04790 at 318.157 kb on - strand, within HMPREF1058_RS04790 at 318.171 kb on - strand, within HMPREF1058_RS04790 at 318.171 kb on - strand, within HMPREF1058_RS04790 at 318.171 kb on - strand, within HMPREF1058_RS04790 at 318.407 kb on + strand at 318.449 kb on + strand at 318.452 kb on + strand at 318.509 kb on - strand at 318.534 kb on + strand at 318.582 kb on + strand at 318.603 kb on - strand at 318.604 kb on + strand at 318.604 kb on + strand at 318.605 kb on - strand at 318.605 kb on - strand at 318.605 kb on - strand at 318.605 kb on - strand at 318.605 kb on - strand at 318.605 kb on - strand at 318.663 kb on + strand, within HMPREF1058_RS04785 at 318.728 kb on + strand, within HMPREF1058_RS04785 at 318.729 kb on - strand, within HMPREF1058_RS04785 at 318.729 kb on - strand, within HMPREF1058_RS04785 at 318.729 kb on - strand, within HMPREF1058_RS04785 at 318.795 kb on + strand, within HMPREF1058_RS04785 at 318.852 kb on - strand, within HMPREF1058_RS04785 at 318.893 kb on + strand, within HMPREF1058_RS04785 at 319.131 kb on - strand, within HMPREF1058_RS04785 at 319.230 kb on + strand, within HMPREF1058_RS04785 at 319.231 kb on - strand, within HMPREF1058_RS04785 at 319.231 kb on - strand, within HMPREF1058_RS04785 at 319.329 kb on - strand at 319.338 kb on - strand at 319.354 kb on + strand at 319.386 kb on - strand at 319.403 kb on - strand at 319.403 kb on - strand at 319.403 kb on - strand at 319.404 kb on + strand at 319.405 kb on - strand at 319.407 kb on - strand at 319.444 kb on - strand at 319.444 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 remove 316,723 + HMPREF1058_RS04795 0.26 +0.5 316,723 + HMPREF1058_RS04795 0.26 -1.8 316,724 - HMPREF1058_RS04795 0.26 -0.8 316,781 + HMPREF1058_RS04795 0.32 -0.2 316,782 - HMPREF1058_RS04795 0.32 -2.2 316,782 - HMPREF1058_RS04795 0.32 +2.2 316,809 - HMPREF1058_RS04795 0.35 +1.0 316,899 - HMPREF1058_RS04795 0.44 -0.9 317,016 - HMPREF1058_RS04795 0.56 -3.6 317,040 - HMPREF1058_RS04795 0.58 -0.5 317,169 - HMPREF1058_RS04795 0.72 +1.2 317,298 - HMPREF1058_RS04795 0.85 +2.0 317,301 - HMPREF1058_RS04795 0.85 +2.3 317,323 + HMPREF1058_RS04795 0.87 -3.2 317,377 - -0.8 317,451 - -0.2 317,455 + +1.4 317,456 - -1.2 317,746 + HMPREF1058_RS04790 0.26 -2.4 317,747 - HMPREF1058_RS04790 0.26 +0.8 317,932 + HMPREF1058_RS04790 0.44 -0.2 317,933 - HMPREF1058_RS04790 0.44 -2.0 318,031 - HMPREF1058_RS04790 0.54 +2.6 318,031 - HMPREF1058_RS04790 0.54 -1.8 318,157 - HMPREF1058_RS04790 0.66 -0.3 318,171 - HMPREF1058_RS04790 0.67 -0.5 318,171 - HMPREF1058_RS04790 0.67 -0.9 318,171 - HMPREF1058_RS04790 0.67 -1.1 318,407 + -0.6 318,449 + -0.5 318,452 + -0.4 318,509 - +1.8 318,534 + +0.4 318,582 + -0.2 318,603 - +0.4 318,604 + +0.6 318,604 + -3.9 318,605 - +0.4 318,605 - +3.2 318,605 - +0.3 318,605 - -0.5 318,605 - -0.9 318,605 - +0.3 318,663 + HMPREF1058_RS04785 0.15 -2.0 318,728 + HMPREF1058_RS04785 0.23 -1.4 318,729 - HMPREF1058_RS04785 0.23 -2.0 318,729 - HMPREF1058_RS04785 0.23 +2.7 318,729 - HMPREF1058_RS04785 0.23 +1.8 318,795 + HMPREF1058_RS04785 0.32 -0.4 318,852 - HMPREF1058_RS04785 0.39 -0.8 318,893 + HMPREF1058_RS04785 0.44 -2.5 319,131 - HMPREF1058_RS04785 0.74 +0.8 319,230 + HMPREF1058_RS04785 0.86 -1.6 319,231 - HMPREF1058_RS04785 0.86 -0.4 319,231 - HMPREF1058_RS04785 0.86 -1.8 319,329 - -0.3 319,338 - +2.8 319,354 + -2.3 319,386 - -0.2 319,403 - -1.0 319,403 - +0.1 319,403 - -1.8 319,404 + -0.8 319,405 - +3.2 319,407 - -0.6 319,444 - -0.1 319,444 - -0.8
Or see this region's nucleotide sequence