Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04485 and HMPREF1058_RS04480 are separated by 662 nucleotides HMPREF1058_RS04480 and HMPREF1058_RS04475 are separated by 18 nucleotides
HMPREF1058_RS04485: HMPREF1058_RS04485 - hypothetical protein, at 19,731 to 20,804
_RS04485
HMPREF1058_RS04480: HMPREF1058_RS04480 - TonB-dependent receptor, at 21,467 to 24,640
_RS04480
HMPREF1058_RS04475: HMPREF1058_RS04475 - RagB/SusD family nutrient uptake outer membrane protein, at 24,659 to 26,332
_RS04475
Position (kb) 21
22
23
24
25 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 20.488 kb on - strand, within HMPREF1058_RS04485 at 20.568 kb on + strand, within HMPREF1058_RS04485 at 20.711 kb on - strand at 20.944 kb on - strand at 20.947 kb on + strand at 20.967 kb on + strand at 20.968 kb on - strand at 20.983 kb on - strand at 21.000 kb on - strand at 21.005 kb on + strand at 21.006 kb on - strand at 21.006 kb on - strand at 21.006 kb on - strand at 21.039 kb on - strand at 21.129 kb on + strand at 21.129 kb on + strand at 21.130 kb on - strand at 21.130 kb on - strand at 21.152 kb on + strand at 21.152 kb on + strand at 21.172 kb on + strand at 21.172 kb on + strand at 21.182 kb on + strand at 21.196 kb on + strand at 21.196 kb on + strand at 21.256 kb on + strand at 21.264 kb on - strand at 21.299 kb on + strand at 21.389 kb on + strand at 21.500 kb on - strand at 21.504 kb on + strand at 21.561 kb on + strand at 21.595 kb on + strand at 21.712 kb on - strand at 21.752 kb on - strand at 21.768 kb on + strand at 21.837 kb on + strand, within HMPREF1058_RS04480 at 22.063 kb on - strand, within HMPREF1058_RS04480 at 22.139 kb on - strand, within HMPREF1058_RS04480 at 22.208 kb on - strand, within HMPREF1058_RS04480 at 22.268 kb on - strand, within HMPREF1058_RS04480 at 22.268 kb on - strand, within HMPREF1058_RS04480 at 22.268 kb on - strand, within HMPREF1058_RS04480 at 22.359 kb on + strand, within HMPREF1058_RS04480 at 22.359 kb on + strand, within HMPREF1058_RS04480 at 22.360 kb on - strand, within HMPREF1058_RS04480 at 22.367 kb on + strand, within HMPREF1058_RS04480 at 22.368 kb on - strand, within HMPREF1058_RS04480 at 22.493 kb on + strand, within HMPREF1058_RS04480 at 22.521 kb on - strand, within HMPREF1058_RS04480 at 22.531 kb on + strand, within HMPREF1058_RS04480 at 22.577 kb on + strand, within HMPREF1058_RS04480 at 22.580 kb on - strand, within HMPREF1058_RS04480 at 22.625 kb on - strand, within HMPREF1058_RS04480 at 22.646 kb on - strand, within HMPREF1058_RS04480 at 22.695 kb on - strand, within HMPREF1058_RS04480 at 22.798 kb on + strand, within HMPREF1058_RS04480 at 22.816 kb on + strand, within HMPREF1058_RS04480 at 22.862 kb on - strand, within HMPREF1058_RS04480 at 22.943 kb on - strand, within HMPREF1058_RS04480 at 23.004 kb on + strand, within HMPREF1058_RS04480 at 23.004 kb on + strand, within HMPREF1058_RS04480 at 23.005 kb on - strand, within HMPREF1058_RS04480 at 23.078 kb on + strand, within HMPREF1058_RS04480 at 23.079 kb on - strand, within HMPREF1058_RS04480 at 23.170 kb on + strand, within HMPREF1058_RS04480 at 23.249 kb on + strand, within HMPREF1058_RS04480 at 23.249 kb on + strand, within HMPREF1058_RS04480 at 23.249 kb on + strand, within HMPREF1058_RS04480 at 23.249 kb on + strand, within HMPREF1058_RS04480 at 23.250 kb on - strand, within HMPREF1058_RS04480 at 23.392 kb on + strand, within HMPREF1058_RS04480 at 23.594 kb on + strand, within HMPREF1058_RS04480 at 23.617 kb on - strand, within HMPREF1058_RS04480 at 23.762 kb on - strand, within HMPREF1058_RS04480 at 23.766 kb on + strand, within HMPREF1058_RS04480 at 23.771 kb on - strand, within HMPREF1058_RS04480 at 23.913 kb on - strand, within HMPREF1058_RS04480 at 24.016 kb on - strand, within HMPREF1058_RS04480 at 24.082 kb on + strand, within HMPREF1058_RS04480 at 24.228 kb on + strand, within HMPREF1058_RS04480 at 24.277 kb on + strand, within HMPREF1058_RS04480 at 24.319 kb on - strand, within HMPREF1058_RS04480 at 24.413 kb on + strand at 24.431 kb on + strand at 24.431 kb on + strand at 24.463 kb on + strand at 24.463 kb on + strand at 24.464 kb on - strand at 24.515 kb on + strand at 24.551 kb on - strand at 24.551 kb on - strand at 24.594 kb on - strand at 24.625 kb on + strand at 24.626 kb on - strand at 24.634 kb on - strand at 24.639 kb on - strand at 24.644 kb on + strand at 24.666 kb on + strand at 24.680 kb on + strand at 24.680 kb on + strand at 24.680 kb on + strand at 24.899 kb on + strand, within HMPREF1058_RS04475 at 24.900 kb on - strand, within HMPREF1058_RS04475 at 24.900 kb on - strand, within HMPREF1058_RS04475 at 24.900 kb on - strand, within HMPREF1058_RS04475 at 25.131 kb on - strand, within HMPREF1058_RS04475 at 25.240 kb on + strand, within HMPREF1058_RS04475 at 25.248 kb on + strand, within HMPREF1058_RS04475 at 25.248 kb on + strand, within HMPREF1058_RS04475 at 25.248 kb on + strand, within HMPREF1058_RS04475 at 25.297 kb on + strand, within HMPREF1058_RS04475 at 25.297 kb on + strand, within HMPREF1058_RS04475 at 25.298 kb on - strand, within HMPREF1058_RS04475 at 25.401 kb on - strand, within HMPREF1058_RS04475 at 25.439 kb on + strand, within HMPREF1058_RS04475 at 25.439 kb on + strand, within HMPREF1058_RS04475 at 25.503 kb on + strand, within HMPREF1058_RS04475 at 25.616 kb on + strand, within HMPREF1058_RS04475
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 remove 20,488 - HMPREF1058_RS04485 0.70 +0.9 20,568 + HMPREF1058_RS04485 0.78 +2.0 20,711 - -2.2 20,944 - +2.7 20,947 + +0.9 20,967 + -1.2 20,968 - +1.2 20,983 - +1.9 21,000 - +0.7 21,005 + -1.6 21,006 - +1.2 21,006 - +2.7 21,006 - -0.4 21,039 - +0.4 21,129 + -1.2 21,129 + +0.2 21,130 - +4.7 21,130 - -1.2 21,152 + +1.9 21,152 + -2.0 21,172 + +0.4 21,172 + -0.8 21,182 + -0.8 21,196 + +2.8 21,196 + +1.8 21,256 + +0.5 21,264 - +1.6 21,299 + -2.8 21,389 + -1.5 21,500 - -0.2 21,504 + -0.8 21,561 + +1.2 21,595 + -0.6 21,712 - +0.2 21,752 - +1.2 21,768 + -0.8 21,837 + HMPREF1058_RS04480 0.12 +0.5 22,063 - HMPREF1058_RS04480 0.19 -2.4 22,139 - HMPREF1058_RS04480 0.21 +0.5 22,208 - HMPREF1058_RS04480 0.23 -0.0 22,268 - HMPREF1058_RS04480 0.25 -2.4 22,268 - HMPREF1058_RS04480 0.25 +0.6 22,268 - HMPREF1058_RS04480 0.25 +0.0 22,359 + HMPREF1058_RS04480 0.28 -0.5 22,359 + HMPREF1058_RS04480 0.28 +0.8 22,360 - HMPREF1058_RS04480 0.28 -2.0 22,367 + HMPREF1058_RS04480 0.28 +0.2 22,368 - HMPREF1058_RS04480 0.28 +2.6 22,493 + HMPREF1058_RS04480 0.32 -1.8 22,521 - HMPREF1058_RS04480 0.33 +1.2 22,531 + HMPREF1058_RS04480 0.34 +7.1 22,577 + HMPREF1058_RS04480 0.35 +0.2 22,580 - HMPREF1058_RS04480 0.35 +1.1 22,625 - HMPREF1058_RS04480 0.36 +0.0 22,646 - HMPREF1058_RS04480 0.37 -0.3 22,695 - HMPREF1058_RS04480 0.39 +0.4 22,798 + HMPREF1058_RS04480 0.42 +0.6 22,816 + HMPREF1058_RS04480 0.43 -0.2 22,862 - HMPREF1058_RS04480 0.44 +1.5 22,943 - HMPREF1058_RS04480 0.47 +0.7 23,004 + HMPREF1058_RS04480 0.48 +3.5 23,004 + HMPREF1058_RS04480 0.48 -1.4 23,005 - HMPREF1058_RS04480 0.48 +1.7 23,078 + HMPREF1058_RS04480 0.51 +2.4 23,079 - HMPREF1058_RS04480 0.51 +0.9 23,170 + HMPREF1058_RS04480 0.54 +1.6 23,249 + HMPREF1058_RS04480 0.56 +2.0 23,249 + HMPREF1058_RS04480 0.56 -1.4 23,249 + HMPREF1058_RS04480 0.56 +3.1 23,249 + HMPREF1058_RS04480 0.56 -2.7 23,250 - HMPREF1058_RS04480 0.56 +0.8 23,392 + HMPREF1058_RS04480 0.61 +0.9 23,594 + HMPREF1058_RS04480 0.67 +0.3 23,617 - HMPREF1058_RS04480 0.68 +0.3 23,762 - HMPREF1058_RS04480 0.72 +1.3 23,766 + HMPREF1058_RS04480 0.72 +0.9 23,771 - HMPREF1058_RS04480 0.73 +1.8 23,913 - HMPREF1058_RS04480 0.77 +1.3 24,016 - HMPREF1058_RS04480 0.80 +1.3 24,082 + HMPREF1058_RS04480 0.82 +0.2 24,228 + HMPREF1058_RS04480 0.87 -2.0 24,277 + HMPREF1058_RS04480 0.89 +1.2 24,319 - HMPREF1058_RS04480 0.90 +2.1 24,413 + +1.7 24,431 + +0.2 24,431 + -0.6 24,463 + +1.2 24,463 + -1.5 24,464 - -0.2 24,515 + -0.4 24,551 - -0.5 24,551 - -1.5 24,594 - +0.7 24,625 + -1.4 24,626 - -0.4 24,634 - +4.1 24,639 - -1.6 24,644 + -2.9 24,666 + +0.3 24,680 + -0.3 24,680 + -0.8 24,680 + +0.5 24,899 + HMPREF1058_RS04475 0.14 +0.2 24,900 - HMPREF1058_RS04475 0.14 -3.8 24,900 - HMPREF1058_RS04475 0.14 -1.9 24,900 - HMPREF1058_RS04475 0.14 +1.2 25,131 - HMPREF1058_RS04475 0.28 -0.7 25,240 + HMPREF1058_RS04475 0.35 -0.2 25,248 + HMPREF1058_RS04475 0.35 +5.0 25,248 + HMPREF1058_RS04475 0.35 +1.1 25,248 + HMPREF1058_RS04475 0.35 -2.6 25,297 + HMPREF1058_RS04475 0.38 -1.2 25,297 + HMPREF1058_RS04475 0.38 +1.5 25,298 - HMPREF1058_RS04475 0.38 +1.9 25,401 - HMPREF1058_RS04475 0.44 +1.4 25,439 + HMPREF1058_RS04475 0.47 +0.0 25,439 + HMPREF1058_RS04475 0.47 -1.5 25,503 + HMPREF1058_RS04475 0.50 +0.4 25,616 + HMPREF1058_RS04475 0.57 +0.3
Or see this region's nucleotide sequence