Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06570

Experiment: R2A with 2-pentyl-furan 32.0526 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS06565 and ABIE51_RS06570 are separated by 108 nucleotidesABIE51_RS06570 and ABIE51_RS06575 overlap by 17 nucleotides ABIE51_RS06565: ABIE51_RS06565 - adenylosuccinate synthase, at 1,397,568 to 1,398,860 _RS06565 ABIE51_RS06570: ABIE51_RS06570 - exopolysaccharide biosynthesis protein, at 1,398,969 to 1,399,610 _RS06570 ABIE51_RS06575: ABIE51_RS06575 - hemolysin family protein, at 1,399,594 to 1,400,931 _RS06575 Position (kb) 1398 1399 1400Strain fitness (log2 ratio) -3 -2 -1 0 1at 1399.135 kb on + strand, within ABIE51_RS06570at 1399.135 kb on + strand, within ABIE51_RS06570at 1399.135 kb on + strand, within ABIE51_RS06570at 1399.135 kb on + strand, within ABIE51_RS06570at 1399.135 kb on + strand, within ABIE51_RS06570at 1399.135 kb on + strand, within ABIE51_RS06570at 1399.135 kb on + strand, within ABIE51_RS06570at 1399.135 kb on + strand, within ABIE51_RS06570at 1399.136 kb on - strand, within ABIE51_RS06570at 1399.136 kb on - strand, within ABIE51_RS06570at 1399.136 kb on - strand, within ABIE51_RS06570at 1399.228 kb on - strand, within ABIE51_RS06570at 1399.542 kb on + strand, within ABIE51_RS06570at 1399.542 kb on + strand, within ABIE51_RS06570at 1399.543 kb on - strand, within ABIE51_RS06570at 1399.543 kb on - strand, within ABIE51_RS06570at 1399.712 kb on + strandat 1399.713 kb on - strandat 1399.724 kb on + strandat 1399.724 kb on + strandat 1399.725 kb on - strandat 1400.450 kb on - strand, within ABIE51_RS06575at 1400.511 kb on - strand, within ABIE51_RS06575at 1400.511 kb on - strand, within ABIE51_RS06575at 1400.511 kb on - strand, within ABIE51_RS06575at 1400.511 kb on - strand, within ABIE51_RS06575

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 32.0526 mM
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1,399,135 + ABIE51_RS06570 0.26 +0.7
1,399,135 + ABIE51_RS06570 0.26 -0.4
1,399,135 + ABIE51_RS06570 0.26 -0.2
1,399,135 + ABIE51_RS06570 0.26 +0.1
1,399,135 + ABIE51_RS06570 0.26 -0.0
1,399,135 + ABIE51_RS06570 0.26 -0.6
1,399,135 + ABIE51_RS06570 0.26 +0.2
1,399,135 + ABIE51_RS06570 0.26 -0.3
1,399,136 - ABIE51_RS06570 0.26 +0.3
1,399,136 - ABIE51_RS06570 0.26 -0.3
1,399,136 - ABIE51_RS06570 0.26 -0.5
1,399,228 - ABIE51_RS06570 0.40 +0.3
1,399,542 + ABIE51_RS06570 0.89 +1.0
1,399,542 + ABIE51_RS06570 0.89 -0.5
1,399,543 - ABIE51_RS06570 0.89 +0.2
1,399,543 - ABIE51_RS06570 0.89 +0.1
1,399,712 + +0.7
1,399,713 - -1.5
1,399,724 + -2.2
1,399,724 + -2.8
1,399,725 - +1.1
1,400,450 - ABIE51_RS06575 0.64 -1.9
1,400,511 - ABIE51_RS06575 0.69 -1.4
1,400,511 - ABIE51_RS06575 0.69 -1.2
1,400,511 - ABIE51_RS06575 0.69 -1.2
1,400,511 - ABIE51_RS06575 0.69 -0.6

Or see this region's nucleotide sequence