Experiment: R2A with 2-pentyl-furan 32.0526 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00630 and ABIE51_RS00635 are separated by 232 nucleotides ABIE51_RS00635 and ABIE51_RS00640 are separated by 91 nucleotides ABIE51_RS00640 and ABIE51_RS00645 are separated by 133 nucleotides
ABIE51_RS00630: ABIE51_RS00630 - aldo/keto reductase, at 130,796 to 131,749
_RS00630
ABIE51_RS00635: ABIE51_RS00635 - hybrid sensor histidine kinase/response regulator, at 131,982 to 133,091
_RS00635
ABIE51_RS00640: ABIE51_RS00640 - hypothetical protein, at 133,183 to 133,590
_RS00640
ABIE51_RS00645: ABIE51_RS00645 - Fe2+-dependent dioxygenase, at 133,724 to 134,389
_RS00645
Position (kb) 131
132
133
134 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 131.025 kb on + strand, within ABIE51_RS00630 at 131.025 kb on + strand, within ABIE51_RS00630 at 131.026 kb on - strand, within ABIE51_RS00630 at 131.026 kb on - strand, within ABIE51_RS00630 at 131.082 kb on + strand, within ABIE51_RS00630 at 131.082 kb on + strand, within ABIE51_RS00630 at 131.082 kb on + strand, within ABIE51_RS00630 at 131.083 kb on - strand, within ABIE51_RS00630 at 131.083 kb on - strand, within ABIE51_RS00630 at 131.115 kb on + strand, within ABIE51_RS00630 at 131.115 kb on + strand, within ABIE51_RS00630 at 131.115 kb on + strand, within ABIE51_RS00630 at 131.116 kb on - strand, within ABIE51_RS00630 at 131.118 kb on + strand, within ABIE51_RS00630 at 131.118 kb on + strand, within ABIE51_RS00630 at 131.118 kb on + strand, within ABIE51_RS00630 at 131.118 kb on + strand, within ABIE51_RS00630 at 131.119 kb on - strand, within ABIE51_RS00630 at 131.119 kb on - strand, within ABIE51_RS00630 at 131.187 kb on + strand, within ABIE51_RS00630 at 131.187 kb on + strand, within ABIE51_RS00630 at 131.187 kb on + strand, within ABIE51_RS00630 at 131.187 kb on + strand, within ABIE51_RS00630 at 131.188 kb on - strand, within ABIE51_RS00630 at 131.188 kb on - strand, within ABIE51_RS00630 at 131.196 kb on + strand, within ABIE51_RS00630 at 131.196 kb on + strand, within ABIE51_RS00630 at 131.196 kb on + strand, within ABIE51_RS00630 at 131.196 kb on + strand, within ABIE51_RS00630 at 131.196 kb on + strand, within ABIE51_RS00630 at 131.197 kb on - strand, within ABIE51_RS00630 at 131.197 kb on - strand, within ABIE51_RS00630 at 131.197 kb on - strand, within ABIE51_RS00630 at 131.197 kb on - strand, within ABIE51_RS00630 at 131.197 kb on - strand, within ABIE51_RS00630 at 131.277 kb on + strand, within ABIE51_RS00630 at 131.277 kb on + strand, within ABIE51_RS00630 at 131.278 kb on - strand, within ABIE51_RS00630 at 131.382 kb on + strand, within ABIE51_RS00630 at 131.382 kb on + strand, within ABIE51_RS00630 at 131.383 kb on - strand, within ABIE51_RS00630 at 131.383 kb on - strand, within ABIE51_RS00630 at 131.580 kb on + strand, within ABIE51_RS00630 at 131.580 kb on + strand, within ABIE51_RS00630 at 131.580 kb on + strand, within ABIE51_RS00630 at 131.580 kb on + strand, within ABIE51_RS00630 at 131.580 kb on + strand, within ABIE51_RS00630 at 131.581 kb on - strand, within ABIE51_RS00630 at 131.768 kb on + strand at 131.768 kb on + strand at 131.768 kb on + strand at 131.769 kb on - strand at 131.769 kb on - strand at 131.796 kb on - strand at 131.796 kb on - strand at 131.820 kb on - strand at 131.820 kb on - strand at 131.820 kb on - strand at 131.915 kb on + strand at 131.915 kb on + strand at 131.990 kb on - strand at 132.078 kb on + strand at 132.078 kb on + strand at 132.123 kb on + strand, within ABIE51_RS00635 at 132.123 kb on + strand, within ABIE51_RS00635 at 132.124 kb on - strand, within ABIE51_RS00635 at 132.129 kb on + strand, within ABIE51_RS00635 at 132.300 kb on + strand, within ABIE51_RS00635 at 132.300 kb on + strand, within ABIE51_RS00635 at 132.300 kb on + strand, within ABIE51_RS00635 at 132.300 kb on + strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.558 kb on + strand, within ABIE51_RS00635 at 132.558 kb on + strand, within ABIE51_RS00635 at 132.558 kb on + strand, within ABIE51_RS00635 at 132.559 kb on - strand, within ABIE51_RS00635 at 132.570 kb on + strand, within ABIE51_RS00635 at 132.571 kb on - strand, within ABIE51_RS00635 at 132.571 kb on - strand, within ABIE51_RS00635 at 132.571 kb on - strand, within ABIE51_RS00635 at 132.571 kb on - strand, within ABIE51_RS00635 at 132.571 kb on - strand, within ABIE51_RS00635 at 132.664 kb on - strand, within ABIE51_RS00635 at 132.792 kb on + strand, within ABIE51_RS00635 at 132.792 kb on + strand, within ABIE51_RS00635 at 132.792 kb on + strand, within ABIE51_RS00635 at 132.792 kb on + strand, within ABIE51_RS00635 at 132.793 kb on - strand, within ABIE51_RS00635 at 132.942 kb on + strand, within ABIE51_RS00635 at 133.017 kb on + strand at 133.018 kb on - strand at 133.176 kb on + strand at 133.343 kb on + strand, within ABIE51_RS00640 at 133.344 kb on - strand, within ABIE51_RS00640 at 133.344 kb on - strand, within ABIE51_RS00640 at 133.442 kb on - strand, within ABIE51_RS00640 at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.976 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.995 kb on - strand, within ABIE51_RS00645 at 133.995 kb on - strand, within ABIE51_RS00645 at 133.995 kb on - strand, within ABIE51_RS00645 at 133.995 kb on - strand, within ABIE51_RS00645 at 133.995 kb on - strand, within ABIE51_RS00645 at 133.995 kb on - strand, within ABIE51_RS00645 at 134.087 kb on + strand, within ABIE51_RS00645
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 32.0526 mM remove 131,025 + ABIE51_RS00630 0.24 +0.4 131,025 + ABIE51_RS00630 0.24 +0.3 131,026 - ABIE51_RS00630 0.24 -0.1 131,026 - ABIE51_RS00630 0.24 +0.4 131,082 + ABIE51_RS00630 0.30 +0.2 131,082 + ABIE51_RS00630 0.30 +1.3 131,082 + ABIE51_RS00630 0.30 -0.9 131,083 - ABIE51_RS00630 0.30 -0.0 131,083 - ABIE51_RS00630 0.30 +1.6 131,115 + ABIE51_RS00630 0.33 +0.1 131,115 + ABIE51_RS00630 0.33 +1.7 131,115 + ABIE51_RS00630 0.33 -0.4 131,116 - ABIE51_RS00630 0.34 -1.0 131,118 + ABIE51_RS00630 0.34 +1.0 131,118 + ABIE51_RS00630 0.34 -0.2 131,118 + ABIE51_RS00630 0.34 +0.6 131,118 + ABIE51_RS00630 0.34 +0.5 131,119 - ABIE51_RS00630 0.34 -0.4 131,119 - ABIE51_RS00630 0.34 +0.1 131,187 + ABIE51_RS00630 0.41 +0.2 131,187 + ABIE51_RS00630 0.41 +0.1 131,187 + ABIE51_RS00630 0.41 +0.9 131,187 + ABIE51_RS00630 0.41 +0.7 131,188 - ABIE51_RS00630 0.41 -0.7 131,188 - ABIE51_RS00630 0.41 -0.1 131,196 + ABIE51_RS00630 0.42 +0.2 131,196 + ABIE51_RS00630 0.42 +1.0 131,196 + ABIE51_RS00630 0.42 +1.3 131,196 + ABIE51_RS00630 0.42 +0.5 131,196 + ABIE51_RS00630 0.42 +0.6 131,197 - ABIE51_RS00630 0.42 +0.1 131,197 - ABIE51_RS00630 0.42 +0.7 131,197 - ABIE51_RS00630 0.42 +0.1 131,197 - ABIE51_RS00630 0.42 +0.1 131,197 - ABIE51_RS00630 0.42 +0.5 131,277 + ABIE51_RS00630 0.50 +0.1 131,277 + ABIE51_RS00630 0.50 +0.9 131,278 - ABIE51_RS00630 0.51 +0.3 131,382 + ABIE51_RS00630 0.61 +0.5 131,382 + ABIE51_RS00630 0.61 +1.8 131,383 - ABIE51_RS00630 0.62 +1.2 131,383 - ABIE51_RS00630 0.62 +0.5 131,580 + ABIE51_RS00630 0.82 +0.3 131,580 + ABIE51_RS00630 0.82 +0.7 131,580 + ABIE51_RS00630 0.82 +0.8 131,580 + ABIE51_RS00630 0.82 +0.3 131,580 + ABIE51_RS00630 0.82 +0.6 131,581 - ABIE51_RS00630 0.82 +0.3 131,768 + +2.5 131,768 + +1.6 131,768 + +0.2 131,769 - -0.3 131,769 - -0.5 131,796 - -0.6 131,796 - -1.3 131,820 - -1.3 131,820 - -1.4 131,820 - -0.1 131,915 + +0.6 131,915 + +0.9 131,990 - -1.3 132,078 + -3.0 132,078 + -5.0 132,123 + ABIE51_RS00635 0.13 -5.1 132,123 + ABIE51_RS00635 0.13 -2.8 132,124 - ABIE51_RS00635 0.13 -4.2 132,129 + ABIE51_RS00635 0.13 -4.1 132,300 + ABIE51_RS00635 0.29 -4.2 132,300 + ABIE51_RS00635 0.29 -3.6 132,300 + ABIE51_RS00635 0.29 -4.6 132,300 + ABIE51_RS00635 0.29 -4.2 132,301 - ABIE51_RS00635 0.29 -3.8 132,301 - ABIE51_RS00635 0.29 -3.8 132,301 - ABIE51_RS00635 0.29 -3.4 132,301 - ABIE51_RS00635 0.29 -3.0 132,301 - ABIE51_RS00635 0.29 -3.6 132,301 - ABIE51_RS00635 0.29 -3.4 132,558 + ABIE51_RS00635 0.52 -4.7 132,558 + ABIE51_RS00635 0.52 -0.4 132,558 + ABIE51_RS00635 0.52 -3.4 132,559 - ABIE51_RS00635 0.52 -4.4 132,570 + ABIE51_RS00635 0.53 -2.9 132,571 - ABIE51_RS00635 0.53 -4.4 132,571 - ABIE51_RS00635 0.53 -2.3 132,571 - ABIE51_RS00635 0.53 -3.4 132,571 - ABIE51_RS00635 0.53 -2.1 132,571 - ABIE51_RS00635 0.53 -5.3 132,664 - ABIE51_RS00635 0.61 -5.1 132,792 + ABIE51_RS00635 0.73 -3.6 132,792 + ABIE51_RS00635 0.73 -3.1 132,792 + ABIE51_RS00635 0.73 -2.7 132,792 + ABIE51_RS00635 0.73 -3.7 132,793 - ABIE51_RS00635 0.73 -5.6 132,942 + ABIE51_RS00635 0.86 -4.4 133,017 + -3.6 133,018 - -1.5 133,176 + -0.3 133,343 + ABIE51_RS00640 0.39 -0.1 133,344 - ABIE51_RS00640 0.39 -0.4 133,344 - ABIE51_RS00640 0.39 -0.3 133,442 - ABIE51_RS00640 0.63 +0.4 133,595 + -0.1 133,595 + -0.6 133,595 + +0.3 133,595 + -0.3 133,595 + -1.0 133,595 + -0.0 133,595 + -0.4 133,595 + +0.2 133,595 + +0.1 133,595 + +1.9 133,596 - -0.0 133,596 - -0.1 133,596 - +0.1 133,596 - -0.7 133,596 - -0.8 133,596 - +0.6 133,596 - +1.3 133,596 - -0.3 133,596 - -1.4 133,596 - +0.2 133,596 - +0.3 133,596 - +0.0 133,596 - +0.3 133,596 - -0.3 133,596 - -0.0 133,596 - -0.2 133,596 - -0.2 133,976 + ABIE51_RS00645 0.38 +0.0 133,994 + ABIE51_RS00645 0.41 +0.8 133,994 + ABIE51_RS00645 0.41 +0.1 133,994 + ABIE51_RS00645 0.41 +0.2 133,994 + ABIE51_RS00645 0.41 +0.8 133,994 + ABIE51_RS00645 0.41 +0.1 133,994 + ABIE51_RS00645 0.41 -0.2 133,994 + ABIE51_RS00645 0.41 -0.2 133,994 + ABIE51_RS00645 0.41 -0.0 133,995 - ABIE51_RS00645 0.41 +0.1 133,995 - ABIE51_RS00645 0.41 +0.3 133,995 - ABIE51_RS00645 0.41 +0.1 133,995 - ABIE51_RS00645 0.41 +0.9 133,995 - ABIE51_RS00645 0.41 -0.2 133,995 - ABIE51_RS00645 0.41 +0.7 134,087 + ABIE51_RS00645 0.55 -0.5
Or see this region's nucleotide sequence