Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS13310

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS13300 and ABIE51_RS13305 overlap by 7 nucleotidesABIE51_RS13305 and ABIE51_RS13310 overlap by 4 nucleotidesABIE51_RS13310 and ABIE51_RS13315 overlap by 4 nucleotides ABIE51_RS13300: ABIE51_RS13300 - imidazole glycerol phosphate synthase subunit HisF, at 2,871,091 to 2,871,867 _RS13300 ABIE51_RS13305: ABIE51_RS13305 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 2,871,861 to 2,872,637 _RS13305 ABIE51_RS13310: ABIE51_RS13310 - imidazole glycerol phosphate synthase subunit HisH, at 2,872,634 to 2,873,236 _RS13310 ABIE51_RS13315: ABIE51_RS13315 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 2,873,233 to 2,874,309 _RS13315 Position (kb) 2872 2873 2874Strain fitness (log2 ratio) -1 0 1at 2871.847 kb on + strandat 2872.487 kb on - strand, within ABIE51_RS13305at 2872.759 kb on - strand, within ABIE51_RS13310at 2872.815 kb on + strand, within ABIE51_RS13310at 2872.984 kb on - strand, within ABIE51_RS13310at 2873.042 kb on - strand, within ABIE51_RS13310at 2873.468 kb on + strand, within ABIE51_RS13315at 2873.468 kb on + strand, within ABIE51_RS13315

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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2,871,847 + -0.1
2,872,487 - ABIE51_RS13305 0.81 -0.0
2,872,759 - ABIE51_RS13310 0.21 +0.5
2,872,815 + ABIE51_RS13310 0.30 -0.1
2,872,984 - ABIE51_RS13310 0.58 -0.1
2,873,042 - ABIE51_RS13310 0.68 +0.0
2,873,468 + ABIE51_RS13315 0.22 +1.3
2,873,468 + ABIE51_RS13315 0.22 -0.4

Or see this region's nucleotide sequence