Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS00620

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS00610 and ABIE51_RS00615 are separated by 80 nucleotidesABIE51_RS00615 and ABIE51_RS00620 are separated by 116 nucleotidesABIE51_RS00620 and ABIE51_RS00625 overlap by 4 nucleotidesABIE51_RS00625 and ABIE51_RS00630 overlap by 4 nucleotides ABIE51_RS00610: ABIE51_RS00610 - class I SAM-dependent methyltransferase, at 126,804 to 127,655 _RS00610 ABIE51_RS00615: ABIE51_RS00615 - pseudouridine synthase, at 127,736 to 128,269 _RS00615 ABIE51_RS00620: ABIE51_RS00620 - nicotinate phosphoribosyltransferase, at 128,386 to 129,810 _RS00620 ABIE51_RS00625: ABIE51_RS00625 - DMT family transporter, at 129,807 to 130,799 _RS00625 ABIE51_RS00630: ABIE51_RS00630 - aldo/keto reductase, at 130,796 to 131,749 _RS00630 Position (kb) 128 129 130Strain fitness (log2 ratio) -2 -1 0 1 2at 127.440 kb on + strand, within ABIE51_RS00610at 127.441 kb on - strand, within ABIE51_RS00610at 127.602 kb on + strandat 127.602 kb on + strandat 127.602 kb on + strandat 127.602 kb on + strandat 127.603 kb on - strandat 127.603 kb on - strandat 127.760 kb on + strandat 127.761 kb on - strandat 127.841 kb on + strand, within ABIE51_RS00615at 127.949 kb on + strand, within ABIE51_RS00615at 127.949 kb on + strand, within ABIE51_RS00615at 127.949 kb on + strand, within ABIE51_RS00615at 127.949 kb on + strand, within ABIE51_RS00615at 127.949 kb on + strand, within ABIE51_RS00615at 127.950 kb on - strand, within ABIE51_RS00615at 127.950 kb on - strand, within ABIE51_RS00615at 127.950 kb on - strand, within ABIE51_RS00615at 128.267 kb on + strandat 128.425 kb on + strandat 128.425 kb on + strandat 128.425 kb on + strandat 128.425 kb on + strandat 128.425 kb on + strandat 128.425 kb on + strandat 128.426 kb on - strandat 128.426 kb on - strandat 128.426 kb on - strandat 128.426 kb on - strandat 128.426 kb on - strandat 128.426 kb on - strandat 128.479 kb on + strandat 128.479 kb on + strandat 128.479 kb on + strandat 128.479 kb on + strandat 128.480 kb on - strandat 128.503 kb on + strandat 128.503 kb on + strandat 128.773 kb on + strand, within ABIE51_RS00620at 128.773 kb on + strand, within ABIE51_RS00620at 128.773 kb on + strand, within ABIE51_RS00620at 128.773 kb on + strand, within ABIE51_RS00620at 128.774 kb on - strand, within ABIE51_RS00620at 128.774 kb on - strand, within ABIE51_RS00620at 128.774 kb on - strand, within ABIE51_RS00620at 128.774 kb on - strand, within ABIE51_RS00620at 129.115 kb on + strand, within ABIE51_RS00620at 129.178 kb on + strand, within ABIE51_RS00620at 129.178 kb on + strand, within ABIE51_RS00620at 129.178 kb on + strand, within ABIE51_RS00620at 129.178 kb on + strand, within ABIE51_RS00620at 129.179 kb on - strand, within ABIE51_RS00620at 129.179 kb on - strand, within ABIE51_RS00620at 129.179 kb on - strand, within ABIE51_RS00620at 129.446 kb on - strand, within ABIE51_RS00620at 129.446 kb on - strand, within ABIE51_RS00620at 129.507 kb on + strand, within ABIE51_RS00620at 129.568 kb on + strand, within ABIE51_RS00620at 129.568 kb on + strand, within ABIE51_RS00620at 129.568 kb on + strand, within ABIE51_RS00620at 129.568 kb on + strand, within ABIE51_RS00620at 129.568 kb on + strand, within ABIE51_RS00620at 130.111 kb on + strand, within ABIE51_RS00625at 130.162 kb on + strand, within ABIE51_RS00625at 130.163 kb on - strand, within ABIE51_RS00625at 130.201 kb on + strand, within ABIE51_RS00625at 130.201 kb on + strand, within ABIE51_RS00625at 130.201 kb on + strand, within ABIE51_RS00625at 130.201 kb on + strand, within ABIE51_RS00625at 130.201 kb on + strand, within ABIE51_RS00625at 130.202 kb on - strand, within ABIE51_RS00625at 130.233 kb on + strand, within ABIE51_RS00625at 130.233 kb on + strand, within ABIE51_RS00625at 130.233 kb on + strand, within ABIE51_RS00625at 130.233 kb on + strand, within ABIE51_RS00625at 130.258 kb on + strand, within ABIE51_RS00625at 130.258 kb on + strand, within ABIE51_RS00625at 130.258 kb on + strand, within ABIE51_RS00625at 130.259 kb on - strand, within ABIE51_RS00625at 130.259 kb on - strand, within ABIE51_RS00625at 130.259 kb on - strand, within ABIE51_RS00625at 130.267 kb on + strand, within ABIE51_RS00625at 130.267 kb on + strand, within ABIE51_RS00625at 130.267 kb on + strand, within ABIE51_RS00625at 130.267 kb on + strand, within ABIE51_RS00625at 130.267 kb on + strand, within ABIE51_RS00625at 130.267 kb on + strand, within ABIE51_RS00625at 130.267 kb on + strand, within ABIE51_RS00625at 130.268 kb on - strand, within ABIE51_RS00625at 130.268 kb on - strand, within ABIE51_RS00625at 130.268 kb on - strand, within ABIE51_RS00625at 130.363 kb on + strand, within ABIE51_RS00625at 130.363 kb on + strand, within ABIE51_RS00625at 130.364 kb on - strand, within ABIE51_RS00625at 130.364 kb on - strand, within ABIE51_RS00625at 130.364 kb on - strand, within ABIE51_RS00625at 130.486 kb on + strand, within ABIE51_RS00625at 130.486 kb on + strand, within ABIE51_RS00625at 130.486 kb on + strand, within ABIE51_RS00625at 130.487 kb on - strand, within ABIE51_RS00625at 130.487 kb on - strand, within ABIE51_RS00625at 130.522 kb on + strand, within ABIE51_RS00625at 130.522 kb on + strand, within ABIE51_RS00625at 130.523 kb on - strand, within ABIE51_RS00625at 130.523 kb on - strand, within ABIE51_RS00625at 130.523 kb on - strand, within ABIE51_RS00625at 130.523 kb on - strand, within ABIE51_RS00625at 130.523 kb on - strand, within ABIE51_RS00625at 130.523 kb on - strand, within ABIE51_RS00625at 130.525 kb on + strand, within ABIE51_RS00625at 130.525 kb on + strand, within ABIE51_RS00625at 130.525 kb on + strand, within ABIE51_RS00625at 130.525 kb on + strand, within ABIE51_RS00625

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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127,440 + ABIE51_RS00610 0.75 +0.6
127,441 - ABIE51_RS00610 0.75 +0.2
127,602 + -0.0
127,602 + -0.3
127,602 + +0.1
127,602 + +0.4
127,603 - +0.2
127,603 - +1.4
127,760 + +0.0
127,761 - -0.1
127,841 + ABIE51_RS00615 0.20 -0.5
127,949 + ABIE51_RS00615 0.40 +0.0
127,949 + ABIE51_RS00615 0.40 +0.0
127,949 + ABIE51_RS00615 0.40 -0.1
127,949 + ABIE51_RS00615 0.40 -0.6
127,949 + ABIE51_RS00615 0.40 +2.0
127,950 - ABIE51_RS00615 0.40 +0.1
127,950 - ABIE51_RS00615 0.40 +0.3
127,950 - ABIE51_RS00615 0.40 +0.1
128,267 + +0.1
128,425 + -1.1
128,425 + +0.5
128,425 + -0.6
128,425 + -1.6
128,425 + -0.1
128,425 + -0.3
128,426 - -0.0
128,426 - +2.6
128,426 - -0.1
128,426 - -0.9
128,426 - -0.4
128,426 - -0.4
128,479 + +0.4
128,479 + -0.2
128,479 + -1.7
128,479 + -0.3
128,480 - +0.3
128,503 + -0.1
128,503 + -0.2
128,773 + ABIE51_RS00620 0.27 -0.1
128,773 + ABIE51_RS00620 0.27 -0.2
128,773 + ABIE51_RS00620 0.27 +1.0
128,773 + ABIE51_RS00620 0.27 -0.7
128,774 - ABIE51_RS00620 0.27 +0.1
128,774 - ABIE51_RS00620 0.27 +0.1
128,774 - ABIE51_RS00620 0.27 +1.0
128,774 - ABIE51_RS00620 0.27 -0.5
129,115 + ABIE51_RS00620 0.51 -0.4
129,178 + ABIE51_RS00620 0.56 -0.3
129,178 + ABIE51_RS00620 0.56 -0.4
129,178 + ABIE51_RS00620 0.56 -0.0
129,178 + ABIE51_RS00620 0.56 -0.0
129,179 - ABIE51_RS00620 0.56 -0.1
129,179 - ABIE51_RS00620 0.56 +0.3
129,179 - ABIE51_RS00620 0.56 -0.8
129,446 - ABIE51_RS00620 0.74 -0.3
129,446 - ABIE51_RS00620 0.74 -0.2
129,507 + ABIE51_RS00620 0.79 -0.1
129,568 + ABIE51_RS00620 0.83 -0.6
129,568 + ABIE51_RS00620 0.83 +0.3
129,568 + ABIE51_RS00620 0.83 +0.0
129,568 + ABIE51_RS00620 0.83 -0.6
129,568 + ABIE51_RS00620 0.83 -0.4
130,111 + ABIE51_RS00625 0.31 +1.6
130,162 + ABIE51_RS00625 0.36 +0.8
130,163 - ABIE51_RS00625 0.36 +0.0
130,201 + ABIE51_RS00625 0.40 +0.4
130,201 + ABIE51_RS00625 0.40 +0.6
130,201 + ABIE51_RS00625 0.40 -0.2
130,201 + ABIE51_RS00625 0.40 +0.6
130,201 + ABIE51_RS00625 0.40 +0.5
130,202 - ABIE51_RS00625 0.40 +0.4
130,233 + ABIE51_RS00625 0.43 +2.0
130,233 + ABIE51_RS00625 0.43 +0.1
130,233 + ABIE51_RS00625 0.43 +0.5
130,233 + ABIE51_RS00625 0.43 +0.0
130,258 + ABIE51_RS00625 0.45 -0.1
130,258 + ABIE51_RS00625 0.45 +1.1
130,258 + ABIE51_RS00625 0.45 -0.7
130,259 - ABIE51_RS00625 0.46 -0.1
130,259 - ABIE51_RS00625 0.46 -0.1
130,259 - ABIE51_RS00625 0.46 -0.7
130,267 + ABIE51_RS00625 0.46 +0.4
130,267 + ABIE51_RS00625 0.46 -0.5
130,267 + ABIE51_RS00625 0.46 -0.2
130,267 + ABIE51_RS00625 0.46 +0.2
130,267 + ABIE51_RS00625 0.46 +0.2
130,267 + ABIE51_RS00625 0.46 -0.0
130,267 + ABIE51_RS00625 0.46 +0.0
130,268 - ABIE51_RS00625 0.46 +0.8
130,268 - ABIE51_RS00625 0.46 -0.2
130,268 - ABIE51_RS00625 0.46 -0.2
130,363 + ABIE51_RS00625 0.56 +0.1
130,363 + ABIE51_RS00625 0.56 -0.3
130,364 - ABIE51_RS00625 0.56 -0.0
130,364 - ABIE51_RS00625 0.56 -0.3
130,364 - ABIE51_RS00625 0.56 +0.2
130,486 + ABIE51_RS00625 0.68 -0.2
130,486 + ABIE51_RS00625 0.68 +0.2
130,486 + ABIE51_RS00625 0.68 -0.2
130,487 - ABIE51_RS00625 0.68 -0.1
130,487 - ABIE51_RS00625 0.68 +0.0
130,522 + ABIE51_RS00625 0.72 -0.3
130,522 + ABIE51_RS00625 0.72 -2.3
130,523 - ABIE51_RS00625 0.72 +0.4
130,523 - ABIE51_RS00625 0.72 +0.2
130,523 - ABIE51_RS00625 0.72 -0.7
130,523 - ABIE51_RS00625 0.72 -1.3
130,523 - ABIE51_RS00625 0.72 +0.2
130,523 - ABIE51_RS00625 0.72 -0.6
130,525 + ABIE51_RS00625 0.72 -0.2
130,525 + ABIE51_RS00625 0.72 +1.7
130,525 + ABIE51_RS00625 0.72 +0.3
130,525 + ABIE51_RS00625 0.72 +0.8

Or see this region's nucleotide sequence