Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00440 and ABIE51_RS00445 are separated by 156 nucleotides ABIE51_RS00445 and ABIE51_RS00450 are separated by 456 nucleotides
ABIE51_RS00440: ABIE51_RS00440 - hypothetical protein, at 95,004 to 95,900
_RS00440
ABIE51_RS00445: ABIE51_RS00445 - acetyl-CoA C-acetyltransferase, at 96,057 to 97,334
_RS00445
ABIE51_RS00450: ABIE51_RS00450 - hypothetical protein, at 97,791 to 98,348
_RS00450
Position (kb) 96
97
98 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 95.170 kb on + strand, within ABIE51_RS00440 at 95.170 kb on + strand, within ABIE51_RS00440 at 95.171 kb on - strand, within ABIE51_RS00440 at 95.227 kb on + strand, within ABIE51_RS00440 at 95.227 kb on + strand, within ABIE51_RS00440 at 95.227 kb on + strand, within ABIE51_RS00440 at 95.227 kb on + strand, within ABIE51_RS00440 at 95.227 kb on + strand, within ABIE51_RS00440 at 95.227 kb on + strand, within ABIE51_RS00440 at 95.227 kb on + strand, within ABIE51_RS00440 at 95.228 kb on - strand, within ABIE51_RS00440 at 95.228 kb on - strand, within ABIE51_RS00440 at 95.228 kb on - strand, within ABIE51_RS00440 at 95.228 kb on - strand, within ABIE51_RS00440 at 95.228 kb on - strand, within ABIE51_RS00440 at 95.228 kb on - strand, within ABIE51_RS00440 at 95.228 kb on - strand, within ABIE51_RS00440 at 95.228 kb on - strand, within ABIE51_RS00440 at 95.228 kb on - strand, within ABIE51_RS00440 at 95.228 kb on - strand, within ABIE51_RS00440 at 95.228 kb on - strand, within ABIE51_RS00440 at 95.332 kb on + strand, within ABIE51_RS00440 at 95.332 kb on + strand, within ABIE51_RS00440 at 95.332 kb on + strand, within ABIE51_RS00440 at 95.333 kb on - strand, within ABIE51_RS00440 at 95.333 kb on - strand, within ABIE51_RS00440 at 95.333 kb on - strand, within ABIE51_RS00440 at 95.333 kb on - strand, within ABIE51_RS00440 at 95.333 kb on - strand, within ABIE51_RS00440 at 95.333 kb on - strand, within ABIE51_RS00440 at 95.333 kb on - strand, within ABIE51_RS00440 at 95.374 kb on + strand, within ABIE51_RS00440 at 95.710 kb on + strand, within ABIE51_RS00440 at 95.710 kb on + strand, within ABIE51_RS00440 at 95.710 kb on + strand, within ABIE51_RS00440 at 95.711 kb on - strand, within ABIE51_RS00440 at 95.711 kb on - strand, within ABIE51_RS00440 at 95.711 kb on - strand, within ABIE51_RS00440 at 95.711 kb on - strand, within ABIE51_RS00440 at 95.711 kb on - strand, within ABIE51_RS00440 at 95.931 kb on + strand at 95.975 kb on + strand at 95.975 kb on + strand at 95.976 kb on - strand at 95.976 kb on - strand at 95.976 kb on - strand at 95.976 kb on - strand at 95.991 kb on + strand at 95.991 kb on + strand at 95.991 kb on + strand at 95.992 kb on - strand at 95.992 kb on - strand at 95.992 kb on - strand at 95.992 kb on - strand at 95.992 kb on - strand at 96.007 kb on + strand at 96.007 kb on + strand at 96.007 kb on + strand at 96.007 kb on + strand at 96.007 kb on + strand at 96.007 kb on + strand at 96.007 kb on + strand at 96.007 kb on + strand at 96.007 kb on + strand at 96.007 kb on + strand at 96.007 kb on + strand at 96.007 kb on + strand at 96.008 kb on - strand at 96.008 kb on - strand at 96.008 kb on - strand at 96.008 kb on - strand at 96.008 kb on - strand at 96.008 kb on - strand at 96.008 kb on - strand at 96.052 kb on + strand at 96.052 kb on + strand at 96.052 kb on + strand at 96.052 kb on + strand at 96.053 kb on - strand at 96.053 kb on - strand at 96.053 kb on - strand at 96.053 kb on - strand at 96.053 kb on - strand at 96.053 kb on - strand at 96.053 kb on - strand at 96.053 kb on - strand at 96.053 kb on - strand at 96.053 kb on - strand at 96.053 kb on - strand at 96.098 kb on + strand at 96.099 kb on - strand at 96.126 kb on + strand at 96.127 kb on - strand at 96.346 kb on - strand, within ABIE51_RS00445 at 96.439 kb on - strand, within ABIE51_RS00445 at 96.905 kb on - strand, within ABIE51_RS00445 at 96.918 kb on + strand, within ABIE51_RS00445 at 96.918 kb on + strand, within ABIE51_RS00445 at 96.918 kb on + strand, within ABIE51_RS00445 at 96.918 kb on + strand, within ABIE51_RS00445 at 96.918 kb on + strand, within ABIE51_RS00445 at 96.918 kb on + strand, within ABIE51_RS00445 at 96.918 kb on + strand, within ABIE51_RS00445 at 96.919 kb on - strand, within ABIE51_RS00445 at 96.919 kb on - strand, within ABIE51_RS00445 at 96.919 kb on - strand, within ABIE51_RS00445 at 96.919 kb on - strand, within ABIE51_RS00445 at 96.919 kb on - strand, within ABIE51_RS00445 at 96.919 kb on - strand, within ABIE51_RS00445 at 96.919 kb on - strand, within ABIE51_RS00445 at 96.919 kb on - strand, within ABIE51_RS00445 at 96.919 kb on - strand, within ABIE51_RS00445 at 97.044 kb on + strand, within ABIE51_RS00445 at 97.045 kb on - strand, within ABIE51_RS00445 at 97.110 kb on + strand, within ABIE51_RS00445 at 97.110 kb on + strand, within ABIE51_RS00445 at 97.110 kb on + strand, within ABIE51_RS00445 at 97.110 kb on + strand, within ABIE51_RS00445 at 97.110 kb on + strand, within ABIE51_RS00445 at 97.110 kb on + strand, within ABIE51_RS00445 at 97.111 kb on - strand, within ABIE51_RS00445 at 97.111 kb on - strand, within ABIE51_RS00445 at 97.111 kb on - strand, within ABIE51_RS00445 at 97.111 kb on - strand, within ABIE51_RS00445 at 97.111 kb on - strand, within ABIE51_RS00445 at 97.111 kb on - strand, within ABIE51_RS00445 at 97.111 kb on - strand, within ABIE51_RS00445 at 97.111 kb on - strand, within ABIE51_RS00445 at 97.111 kb on - strand, within ABIE51_RS00445 at 97.111 kb on - strand, within ABIE51_RS00445 at 97.494 kb on - strand at 97.494 kb on - strand at 97.534 kb on + strand at 97.534 kb on + strand at 97.535 kb on - strand at 97.685 kb on + strand at 97.686 kb on - strand at 97.809 kb on + strand at 97.974 kb on + strand, within ABIE51_RS00450 at 97.974 kb on + strand, within ABIE51_RS00450 at 97.974 kb on + strand, within ABIE51_RS00450 at 97.974 kb on + strand, within ABIE51_RS00450 at 97.974 kb on + strand, within ABIE51_RS00450 at 97.975 kb on - strand, within ABIE51_RS00450 at 97.975 kb on - strand, within ABIE51_RS00450 at 97.975 kb on - strand, within ABIE51_RS00450 at 97.975 kb on - strand, within ABIE51_RS00450 at 97.995 kb on + strand, within ABIE51_RS00450 at 97.995 kb on + strand, within ABIE51_RS00450 at 97.995 kb on + strand, within ABIE51_RS00450 at 97.996 kb on - strand, within ABIE51_RS00450 at 97.996 kb on - strand, within ABIE51_RS00450 at 97.996 kb on - strand, within ABIE51_RS00450 at 97.996 kb on - strand, within ABIE51_RS00450 at 97.996 kb on - strand, within ABIE51_RS00450 at 98.025 kb on + strand, within ABIE51_RS00450 at 98.025 kb on + strand, within ABIE51_RS00450 at 98.026 kb on - strand, within ABIE51_RS00450 at 98.026 kb on - strand, within ABIE51_RS00450 at 98.280 kb on + strand, within ABIE51_RS00450 at 98.280 kb on + strand, within ABIE51_RS00450 at 98.280 kb on + strand, within ABIE51_RS00450 at 98.280 kb on + strand, within ABIE51_RS00450 at 98.280 kb on + strand, within ABIE51_RS00450 at 98.280 kb on + strand, within ABIE51_RS00450 at 98.280 kb on + strand, within ABIE51_RS00450 at 98.280 kb on + strand, within ABIE51_RS00450 at 98.280 kb on + strand, within ABIE51_RS00450 at 98.280 kb on + strand, within ABIE51_RS00450 at 98.280 kb on + strand, within ABIE51_RS00450 at 98.280 kb on + strand, within ABIE51_RS00450 at 98.280 kb on + strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.281 kb on - strand, within ABIE51_RS00450 at 98.334 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 95,170 + ABIE51_RS00440 0.19 -1.3 95,170 + ABIE51_RS00440 0.19 -0.5 95,171 - ABIE51_RS00440 0.19 -0.1 95,227 + ABIE51_RS00440 0.25 +0.3 95,227 + ABIE51_RS00440 0.25 -1.5 95,227 + ABIE51_RS00440 0.25 -0.3 95,227 + ABIE51_RS00440 0.25 -0.4 95,227 + ABIE51_RS00440 0.25 -0.1 95,227 + ABIE51_RS00440 0.25 -0.3 95,227 + ABIE51_RS00440 0.25 -0.8 95,228 - ABIE51_RS00440 0.25 -1.0 95,228 - ABIE51_RS00440 0.25 +0.0 95,228 - ABIE51_RS00440 0.25 -0.6 95,228 - ABIE51_RS00440 0.25 -1.1 95,228 - ABIE51_RS00440 0.25 -0.4 95,228 - ABIE51_RS00440 0.25 -1.2 95,228 - ABIE51_RS00440 0.25 -0.7 95,228 - ABIE51_RS00440 0.25 -0.6 95,228 - ABIE51_RS00440 0.25 +0.0 95,228 - ABIE51_RS00440 0.25 -0.4 95,228 - ABIE51_RS00440 0.25 -0.4 95,332 + ABIE51_RS00440 0.37 -1.7 95,332 + ABIE51_RS00440 0.37 -0.8 95,332 + ABIE51_RS00440 0.37 -1.2 95,333 - ABIE51_RS00440 0.37 -0.1 95,333 - ABIE51_RS00440 0.37 -0.3 95,333 - ABIE51_RS00440 0.37 -1.0 95,333 - ABIE51_RS00440 0.37 -0.6 95,333 - ABIE51_RS00440 0.37 -1.3 95,333 - ABIE51_RS00440 0.37 -1.9 95,333 - ABIE51_RS00440 0.37 -0.8 95,374 + ABIE51_RS00440 0.41 -1.0 95,710 + ABIE51_RS00440 0.79 -0.3 95,710 + ABIE51_RS00440 0.79 -0.5 95,710 + ABIE51_RS00440 0.79 +0.2 95,711 - ABIE51_RS00440 0.79 -2.7 95,711 - ABIE51_RS00440 0.79 -2.0 95,711 - ABIE51_RS00440 0.79 -0.1 95,711 - ABIE51_RS00440 0.79 -1.2 95,711 - ABIE51_RS00440 0.79 -1.5 95,931 + -0.1 95,975 + +0.6 95,975 + -0.8 95,976 - +0.1 95,976 - -0.5 95,976 - +0.3 95,976 - +0.3 95,991 + +0.7 95,991 + -0.0 95,991 + -0.2 95,992 - +0.4 95,992 - +0.2 95,992 - +0.1 95,992 - +0.4 95,992 - -0.1 96,007 + +1.5 96,007 + +0.1 96,007 + -0.1 96,007 + +0.1 96,007 + +0.4 96,007 + -0.0 96,007 + -0.2 96,007 + +0.5 96,007 + -0.1 96,007 + +1.6 96,007 + +0.3 96,007 + +1.0 96,008 - -0.3 96,008 - -0.2 96,008 - -0.1 96,008 - -0.2 96,008 - +0.5 96,008 - -0.1 96,008 - +1.0 96,052 + -0.2 96,052 + +0.9 96,052 + -0.5 96,052 + +0.0 96,053 - -0.1 96,053 - +0.0 96,053 - +0.0 96,053 - +0.6 96,053 - +0.0 96,053 - +0.2 96,053 - +0.2 96,053 - -0.3 96,053 - +0.5 96,053 - +0.6 96,053 - -0.0 96,098 + -0.1 96,099 - +0.1 96,126 + -0.1 96,127 - -0.0 96,346 - ABIE51_RS00445 0.23 -0.2 96,439 - ABIE51_RS00445 0.30 -0.0 96,905 - ABIE51_RS00445 0.66 -0.7 96,918 + ABIE51_RS00445 0.67 -0.4 96,918 + ABIE51_RS00445 0.67 +0.3 96,918 + ABIE51_RS00445 0.67 +0.2 96,918 + ABIE51_RS00445 0.67 -0.2 96,918 + ABIE51_RS00445 0.67 -0.1 96,918 + ABIE51_RS00445 0.67 +1.0 96,918 + ABIE51_RS00445 0.67 -0.1 96,919 - ABIE51_RS00445 0.67 -0.6 96,919 - ABIE51_RS00445 0.67 +1.2 96,919 - ABIE51_RS00445 0.67 -0.5 96,919 - ABIE51_RS00445 0.67 +0.0 96,919 - ABIE51_RS00445 0.67 -0.0 96,919 - ABIE51_RS00445 0.67 -0.1 96,919 - ABIE51_RS00445 0.67 -0.1 96,919 - ABIE51_RS00445 0.67 -0.2 96,919 - ABIE51_RS00445 0.67 -0.5 97,044 + ABIE51_RS00445 0.77 -0.2 97,045 - ABIE51_RS00445 0.77 -0.3 97,110 + ABIE51_RS00445 0.82 +1.4 97,110 + ABIE51_RS00445 0.82 -0.0 97,110 + ABIE51_RS00445 0.82 +0.3 97,110 + ABIE51_RS00445 0.82 +0.2 97,110 + ABIE51_RS00445 0.82 +0.1 97,110 + ABIE51_RS00445 0.82 +0.3 97,111 - ABIE51_RS00445 0.82 +2.6 97,111 - ABIE51_RS00445 0.82 -0.1 97,111 - ABIE51_RS00445 0.82 +0.1 97,111 - ABIE51_RS00445 0.82 +0.7 97,111 - ABIE51_RS00445 0.82 -0.0 97,111 - ABIE51_RS00445 0.82 +0.2 97,111 - ABIE51_RS00445 0.82 +0.0 97,111 - ABIE51_RS00445 0.82 -0.2 97,111 - ABIE51_RS00445 0.82 -0.1 97,111 - ABIE51_RS00445 0.82 +0.6 97,494 - +0.2 97,494 - +0.9 97,534 + +0.7 97,534 + +0.4 97,535 - -0.1 97,685 + -0.5 97,686 - -0.1 97,809 + +0.2 97,974 + ABIE51_RS00450 0.33 +0.1 97,974 + ABIE51_RS00450 0.33 -1.2 97,974 + ABIE51_RS00450 0.33 -0.3 97,974 + ABIE51_RS00450 0.33 -0.1 97,974 + ABIE51_RS00450 0.33 -0.3 97,975 - ABIE51_RS00450 0.33 -0.0 97,975 - ABIE51_RS00450 0.33 +3.3 97,975 - ABIE51_RS00450 0.33 +1.2 97,975 - ABIE51_RS00450 0.33 -0.4 97,995 + ABIE51_RS00450 0.37 +0.2 97,995 + ABIE51_RS00450 0.37 +1.3 97,995 + ABIE51_RS00450 0.37 -0.1 97,996 - ABIE51_RS00450 0.37 +0.2 97,996 - ABIE51_RS00450 0.37 -1.6 97,996 - ABIE51_RS00450 0.37 +0.3 97,996 - ABIE51_RS00450 0.37 -0.1 97,996 - ABIE51_RS00450 0.37 +0.4 98,025 + ABIE51_RS00450 0.42 -0.1 98,025 + ABIE51_RS00450 0.42 -0.1 98,026 - ABIE51_RS00450 0.42 -0.5 98,026 - ABIE51_RS00450 0.42 -1.0 98,280 + ABIE51_RS00450 0.88 -0.2 98,280 + ABIE51_RS00450 0.88 +0.2 98,280 + ABIE51_RS00450 0.88 -0.3 98,280 + ABIE51_RS00450 0.88 -0.2 98,280 + ABIE51_RS00450 0.88 +0.1 98,280 + ABIE51_RS00450 0.88 +0.1 98,280 + ABIE51_RS00450 0.88 -1.4 98,280 + ABIE51_RS00450 0.88 +0.7 98,280 + ABIE51_RS00450 0.88 -0.2 98,280 + ABIE51_RS00450 0.88 +0.0 98,280 + ABIE51_RS00450 0.88 -0.6 98,280 + ABIE51_RS00450 0.88 -0.1 98,280 + ABIE51_RS00450 0.88 -1.2 98,281 - ABIE51_RS00450 0.88 -0.4 98,281 - ABIE51_RS00450 0.88 +0.7 98,281 - ABIE51_RS00450 0.88 -0.1 98,281 - ABIE51_RS00450 0.88 -0.9 98,281 - ABIE51_RS00450 0.88 +0.5 98,281 - ABIE51_RS00450 0.88 -1.1 98,281 - ABIE51_RS00450 0.88 -0.2 98,281 - ABIE51_RS00450 0.88 +0.2 98,281 - ABIE51_RS00450 0.88 -0.5 98,281 - ABIE51_RS00450 0.88 +0.4 98,281 - ABIE51_RS00450 0.88 +0.3 98,281 - ABIE51_RS00450 0.88 +0.2 98,281 - ABIE51_RS00450 0.88 -0.1 98,281 - ABIE51_RS00450 0.88 +1.1 98,281 - ABIE51_RS00450 0.88 -0.1 98,281 - ABIE51_RS00450 0.88 +0.1 98,281 - ABIE51_RS00450 0.88 +0.6 98,281 - ABIE51_RS00450 0.88 +0.3 98,334 + +0.3
Or see this region's nucleotide sequence