Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS00265

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS00260 and ABIE51_RS00265 are separated by 198 nucleotidesABIE51_RS00265 and ABIE51_RS00270 are separated by 197 nucleotidesABIE51_RS00270 and ABIE51_RS00275 are separated by 208 nucleotides ABIE51_RS00260: ABIE51_RS00260 - alpha/beta fold hydrolase, at 53,157 to 54,056 _RS00260 ABIE51_RS00265: ABIE51_RS00265 - 3-oxoacyl-ACP synthase III, at 54,255 to 55,277 _RS00265 ABIE51_RS00270: ABIE51_RS00270 - DUF4156 domain-containing protein, at 55,475 to 55,798 _RS00270 ABIE51_RS00275: ABIE51_RS00275 - pitrilysin family protein, at 56,007 to 58,862 _RS00275 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1at 53.354 kb on - strand, within ABIE51_RS00260at 53.468 kb on - strand, within ABIE51_RS00260at 53.479 kb on + strand, within ABIE51_RS00260at 53.480 kb on - strand, within ABIE51_RS00260at 53.480 kb on - strand, within ABIE51_RS00260at 53.480 kb on - strand, within ABIE51_RS00260at 53.480 kb on - strand, within ABIE51_RS00260at 53.480 kb on - strand, within ABIE51_RS00260at 53.480 kb on - strand, within ABIE51_RS00260at 53.480 kb on - strand, within ABIE51_RS00260at 53.524 kb on + strand, within ABIE51_RS00260at 53.524 kb on + strand, within ABIE51_RS00260at 53.524 kb on + strand, within ABIE51_RS00260at 53.524 kb on + strand, within ABIE51_RS00260at 53.525 kb on - strand, within ABIE51_RS00260at 53.525 kb on - strand, within ABIE51_RS00260at 53.803 kb on + strand, within ABIE51_RS00260at 53.804 kb on - strand, within ABIE51_RS00260at 53.873 kb on - strand, within ABIE51_RS00260at 53.908 kb on + strand, within ABIE51_RS00260at 53.908 kb on + strand, within ABIE51_RS00260at 53.908 kb on + strand, within ABIE51_RS00260at 53.908 kb on + strand, within ABIE51_RS00260at 53.909 kb on - strand, within ABIE51_RS00260at 53.909 kb on - strand, within ABIE51_RS00260at 53.909 kb on - strand, within ABIE51_RS00260at 53.977 kb on + strandat 53.977 kb on + strandat 53.977 kb on + strandat 53.977 kb on + strandat 53.977 kb on + strandat 53.977 kb on + strandat 53.977 kb on + strandat 53.978 kb on - strandat 53.978 kb on - strandat 53.978 kb on - strandat 53.978 kb on - strandat 54.029 kb on - strandat 54.110 kb on + strandat 54.110 kb on + strandat 54.111 kb on - strandat 54.257 kb on - strandat 54.257 kb on - strandat 54.257 kb on - strandat 54.284 kb on + strandat 54.284 kb on + strandat 54.284 kb on + strandat 54.284 kb on + strandat 54.285 kb on - strandat 54.285 kb on - strandat 54.285 kb on - strandat 54.808 kb on + strand, within ABIE51_RS00265at 54.808 kb on + strand, within ABIE51_RS00265at 54.808 kb on + strand, within ABIE51_RS00265at 54.808 kb on + strand, within ABIE51_RS00265at 54.809 kb on - strand, within ABIE51_RS00265at 54.809 kb on - strand, within ABIE51_RS00265at 54.847 kb on + strand, within ABIE51_RS00265at 54.848 kb on - strand, within ABIE51_RS00265at 54.848 kb on - strand, within ABIE51_RS00265at 54.848 kb on - strand, within ABIE51_RS00265at 54.995 kb on - strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.160 kb on - strand, within ABIE51_RS00265at 55.160 kb on - strand, within ABIE51_RS00265at 55.238 kb on + strandat 55.239 kb on - strandat 55.239 kb on - strandat 55.315 kb on + strandat 55.323 kb on - strandat 55.323 kb on - strandat 55.391 kb on + strandat 55.392 kb on - strandat 55.422 kb on + strandat 55.422 kb on + strandat 55.422 kb on + strandat 55.422 kb on + strandat 55.422 kb on + strandat 55.423 kb on - strandat 55.621 kb on - strand, within ABIE51_RS00270at 55.621 kb on - strand, within ABIE51_RS00270at 55.621 kb on - strand, within ABIE51_RS00270at 55.621 kb on - strand, within ABIE51_RS00270at 55.621 kb on - strand, within ABIE51_RS00270at 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.158 kb on - strandat 56.158 kb on - strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.207 kb on - strandat 56.207 kb on - strandat 56.207 kb on - strandat 56.207 kb on - strandat 56.207 kb on - strandat 56.207 kb on - strandat 56.207 kb on - strandat 56.225 kb on - strandat 56.225 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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53,354 - ABIE51_RS00260 0.22 +0.1
53,468 - ABIE51_RS00260 0.35 -0.0
53,479 + ABIE51_RS00260 0.36 -0.1
53,480 - ABIE51_RS00260 0.36 -0.8
53,480 - ABIE51_RS00260 0.36 -0.3
53,480 - ABIE51_RS00260 0.36 +1.1
53,480 - ABIE51_RS00260 0.36 -0.7
53,480 - ABIE51_RS00260 0.36 -0.1
53,480 - ABIE51_RS00260 0.36 -0.2
53,480 - ABIE51_RS00260 0.36 -0.8
53,524 + ABIE51_RS00260 0.41 +1.0
53,524 + ABIE51_RS00260 0.41 -0.9
53,524 + ABIE51_RS00260 0.41 +0.4
53,524 + ABIE51_RS00260 0.41 -0.0
53,525 - ABIE51_RS00260 0.41 -0.3
53,525 - ABIE51_RS00260 0.41 +0.4
53,803 + ABIE51_RS00260 0.72 -0.1
53,804 - ABIE51_RS00260 0.72 -0.3
53,873 - ABIE51_RS00260 0.80 -0.9
53,908 + ABIE51_RS00260 0.83 +0.2
53,908 + ABIE51_RS00260 0.83 -0.4
53,908 + ABIE51_RS00260 0.83 -1.0
53,908 + ABIE51_RS00260 0.83 +0.2
53,909 - ABIE51_RS00260 0.84 -0.6
53,909 - ABIE51_RS00260 0.84 -0.5
53,909 - ABIE51_RS00260 0.84 -0.9
53,977 + -0.0
53,977 + -0.3
53,977 + +0.1
53,977 + +0.6
53,977 + +0.1
53,977 + +0.0
53,977 + -0.1
53,978 - -0.2
53,978 - +0.1
53,978 - -0.2
53,978 - -0.2
54,029 - +0.9
54,110 + +0.8
54,110 + +0.7
54,111 - +0.2
54,257 - +0.3
54,257 - +0.2
54,257 - +0.0
54,284 + +0.5
54,284 + +1.0
54,284 + -0.4
54,284 + -0.4
54,285 - -0.3
54,285 - -0.2
54,285 - +0.4
54,808 + ABIE51_RS00265 0.54 -0.3
54,808 + ABIE51_RS00265 0.54 -0.1
54,808 + ABIE51_RS00265 0.54 +0.2
54,808 + ABIE51_RS00265 0.54 +0.0
54,809 - ABIE51_RS00265 0.54 +0.1
54,809 - ABIE51_RS00265 0.54 +0.5
54,847 + ABIE51_RS00265 0.58 -0.7
54,848 - ABIE51_RS00265 0.58 -0.8
54,848 - ABIE51_RS00265 0.58 -0.1
54,848 - ABIE51_RS00265 0.58 -2.4
54,995 - ABIE51_RS00265 0.72 -1.3
55,159 + ABIE51_RS00265 0.88 +0.0
55,159 + ABIE51_RS00265 0.88 +0.2
55,159 + ABIE51_RS00265 0.88 +0.1
55,159 + ABIE51_RS00265 0.88 +1.0
55,159 + ABIE51_RS00265 0.88 -0.0
55,159 + ABIE51_RS00265 0.88 -0.1
55,159 + ABIE51_RS00265 0.88 +0.4
55,159 + ABIE51_RS00265 0.88 +0.1
55,159 + ABIE51_RS00265 0.88 -0.4
55,159 + ABIE51_RS00265 0.88 +0.5
55,159 + ABIE51_RS00265 0.88 +0.7
55,159 + ABIE51_RS00265 0.88 +0.3
55,160 - ABIE51_RS00265 0.88 +0.1
55,160 - ABIE51_RS00265 0.88 +0.4
55,238 + -0.3
55,239 - +0.2
55,239 - +0.4
55,315 + +0.4
55,323 - +0.1
55,323 - -0.1
55,391 + -0.2
55,392 - -0.3
55,422 + +1.0
55,422 + +0.1
55,422 + -0.0
55,422 + +0.1
55,422 + +0.1
55,423 - +0.2
55,621 - ABIE51_RS00270 0.45 +1.0
55,621 - ABIE51_RS00270 0.45 +1.0
55,621 - ABIE51_RS00270 0.45 -0.1
55,621 - ABIE51_RS00270 0.45 -0.1
55,621 - ABIE51_RS00270 0.45 +0.3
56,157 + +0.4
56,157 + +0.4
56,157 + -0.5
56,157 + -0.2
56,157 + -0.2
56,157 + -0.1
56,157 + -0.6
56,157 + +0.5
56,157 + -0.2
56,157 + -0.2
56,158 - -0.6
56,158 - +0.3
56,206 + -0.4
56,206 + -0.6
56,206 + -0.4
56,206 + -0.0
56,206 + +0.5
56,206 + -0.4
56,206 + -1.0
56,206 + +0.0
56,206 + -0.3
56,206 + -0.7
56,206 + +0.0
56,207 - -0.0
56,207 - +0.4
56,207 - +0.2
56,207 - -0.2
56,207 - -0.0
56,207 - +0.4
56,207 - -0.2
56,225 - +0.2
56,225 - +0.1

Or see this region's nucleotide sequence