Experiment: R2A with 2-pentyl-furan 10.6842 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01435 and ABIE51_RS01440 are separated by 216 nucleotides ABIE51_RS01440 and ABIE51_RS01445 are separated by 39 nucleotides ABIE51_RS01445 and ABIE51_RS01450 are separated by 170 nucleotides ABIE51_RS01450 and ABIE51_RS01455 are separated by 100 nucleotides
ABIE51_RS01435: ABIE51_RS01435 - ammonium transporter, at 313,289 to 314,692
_RS01435
ABIE51_RS01440: ABIE51_RS01440 - P-II family nitrogen regulator, at 314,909 to 315,247
_RS01440
ABIE51_RS01445: ABIE51_RS01445 - TorF family putative porin, at 315,287 to 316,054
_RS01445
ABIE51_RS01450: ABIE51_RS01450 - GNAT family N-acetyltransferase, at 316,225 to 316,689
_RS01450
ABIE51_RS01455: ABIE51_RS01455 - type I glutamate--ammonia ligase, at 316,790 to 318,199
_RS01455
Position (kb) 315
316
317 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 314.310 kb on + strand, within ABIE51_RS01435 at 314.310 kb on + strand, within ABIE51_RS01435 at 314.311 kb on - strand, within ABIE51_RS01435 at 314.424 kb on + strand, within ABIE51_RS01435 at 314.424 kb on + strand, within ABIE51_RS01435 at 314.425 kb on - strand, within ABIE51_RS01435 at 314.515 kb on - strand, within ABIE51_RS01435 at 315.096 kb on + strand, within ABIE51_RS01440 at 315.111 kb on + strand, within ABIE51_RS01440 at 315.267 kb on + strand at 315.267 kb on + strand at 315.268 kb on - strand at 315.268 kb on - strand at 315.268 kb on - strand at 315.298 kb on + strand at 315.298 kb on + strand at 315.299 kb on - strand at 315.354 kb on + strand at 315.384 kb on + strand, within ABIE51_RS01445 at 315.591 kb on + strand, within ABIE51_RS01445 at 315.591 kb on + strand, within ABIE51_RS01445 at 315.591 kb on + strand, within ABIE51_RS01445 at 315.591 kb on + strand, within ABIE51_RS01445 at 315.592 kb on - strand, within ABIE51_RS01445 at 315.592 kb on - strand, within ABIE51_RS01445 at 315.592 kb on - strand, within ABIE51_RS01445 at 315.597 kb on + strand, within ABIE51_RS01445 at 315.597 kb on + strand, within ABIE51_RS01445 at 315.597 kb on + strand, within ABIE51_RS01445 at 315.597 kb on + strand, within ABIE51_RS01445 at 315.598 kb on - strand, within ABIE51_RS01445 at 315.598 kb on - strand, within ABIE51_RS01445 at 315.598 kb on - strand, within ABIE51_RS01445 at 315.690 kb on + strand, within ABIE51_RS01445 at 315.690 kb on + strand, within ABIE51_RS01445 at 315.691 kb on - strand, within ABIE51_RS01445 at 315.693 kb on + strand, within ABIE51_RS01445 at 315.693 kb on + strand, within ABIE51_RS01445 at 315.693 kb on + strand, within ABIE51_RS01445 at 315.750 kb on + strand, within ABIE51_RS01445 at 315.840 kb on + strand, within ABIE51_RS01445 at 315.840 kb on + strand, within ABIE51_RS01445 at 315.841 kb on - strand, within ABIE51_RS01445 at 315.861 kb on + strand, within ABIE51_RS01445 at 315.921 kb on + strand, within ABIE51_RS01445 at 315.921 kb on + strand, within ABIE51_RS01445 at 315.922 kb on - strand, within ABIE51_RS01445 at 315.922 kb on - strand, within ABIE51_RS01445 at 315.922 kb on - strand, within ABIE51_RS01445 at 316.071 kb on - strand at 316.071 kb on - strand at 316.227 kb on - strand at 316.227 kb on - strand at 316.277 kb on + strand, within ABIE51_RS01450 at 316.277 kb on + strand, within ABIE51_RS01450 at 316.277 kb on + strand, within ABIE51_RS01450 at 316.278 kb on - strand, within ABIE51_RS01450 at 316.319 kb on + strand, within ABIE51_RS01450 at 316.320 kb on - strand, within ABIE51_RS01450 at 316.320 kb on - strand, within ABIE51_RS01450 at 316.380 kb on - strand, within ABIE51_RS01450 at 316.380 kb on - strand, within ABIE51_RS01450 at 316.739 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 10.6842 mM remove 314,310 + ABIE51_RS01435 0.73 -1.0 314,310 + ABIE51_RS01435 0.73 +0.1 314,311 - ABIE51_RS01435 0.73 -0.6 314,424 + ABIE51_RS01435 0.81 +0.1 314,424 + ABIE51_RS01435 0.81 +0.8 314,425 - ABIE51_RS01435 0.81 +0.1 314,515 - ABIE51_RS01435 0.87 +1.0 315,096 + ABIE51_RS01440 0.55 -0.0 315,111 + ABIE51_RS01440 0.60 -2.9 315,267 + -0.0 315,267 + +0.0 315,268 - -0.7 315,268 - -0.5 315,268 - +0.4 315,298 + +0.2 315,298 + -0.1 315,299 - +0.0 315,354 + +0.3 315,384 + ABIE51_RS01445 0.13 -0.3 315,591 + ABIE51_RS01445 0.40 -0.3 315,591 + ABIE51_RS01445 0.40 -0.4 315,591 + ABIE51_RS01445 0.40 +1.3 315,591 + ABIE51_RS01445 0.40 -0.3 315,592 - ABIE51_RS01445 0.40 +0.3 315,592 - ABIE51_RS01445 0.40 -0.2 315,592 - ABIE51_RS01445 0.40 +0.7 315,597 + ABIE51_RS01445 0.40 -0.1 315,597 + ABIE51_RS01445 0.40 +0.1 315,597 + ABIE51_RS01445 0.40 +0.6 315,597 + ABIE51_RS01445 0.40 +0.6 315,598 - ABIE51_RS01445 0.40 -0.7 315,598 - ABIE51_RS01445 0.40 -0.2 315,598 - ABIE51_RS01445 0.40 -0.3 315,690 + ABIE51_RS01445 0.52 -0.2 315,690 + ABIE51_RS01445 0.52 +0.2 315,691 - ABIE51_RS01445 0.53 -0.2 315,693 + ABIE51_RS01445 0.53 +0.4 315,693 + ABIE51_RS01445 0.53 -0.1 315,693 + ABIE51_RS01445 0.53 -0.2 315,750 + ABIE51_RS01445 0.60 +0.7 315,840 + ABIE51_RS01445 0.72 -0.1 315,840 + ABIE51_RS01445 0.72 +0.2 315,841 - ABIE51_RS01445 0.72 -0.6 315,861 + ABIE51_RS01445 0.75 -0.5 315,921 + ABIE51_RS01445 0.83 -0.4 315,921 + ABIE51_RS01445 0.83 -0.9 315,922 - ABIE51_RS01445 0.83 +0.0 315,922 - ABIE51_RS01445 0.83 -0.9 315,922 - ABIE51_RS01445 0.83 -0.3 316,071 - -0.7 316,071 - +0.3 316,227 - -0.6 316,227 - +0.1 316,277 + ABIE51_RS01450 0.11 -0.6 316,277 + ABIE51_RS01450 0.11 -0.7 316,277 + ABIE51_RS01450 0.11 -0.5 316,278 - ABIE51_RS01450 0.11 +0.2 316,319 + ABIE51_RS01450 0.20 -0.0 316,320 - ABIE51_RS01450 0.20 +0.3 316,320 - ABIE51_RS01450 0.20 +0.2 316,380 - ABIE51_RS01450 0.33 -0.6 316,380 - ABIE51_RS01450 0.33 -0.3 316,739 + -0.9
Or see this region's nucleotide sequence