Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06865

Experiment: R2A with 2-pentyl-furan 10.6842 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS06860 and ABIE51_RS06865 overlap by 109 nucleotidesABIE51_RS06865 and ABIE51_RS06870 are separated by 53 nucleotidesABIE51_RS06870 and ABIE51_RS06875 overlap by 11 nucleotides ABIE51_RS06860: ABIE51_RS06860 - winged helix-turn-helix domain-containing protein, at 1,475,368 to 1,476,426 _RS06860 ABIE51_RS06865: ABIE51_RS06865 - tetratricopeptide repeat protein, at 1,476,318 to 1,477,613 _RS06865 ABIE51_RS06870: ABIE51_RS06870 - hypothetical protein, at 1,477,667 to 1,478,077 _RS06870 ABIE51_RS06875: ABIE51_RS06875 - ribonuclease HII, at 1,478,067 to 1,478,744 _RS06875 Position (kb) 1476 1477 1478Strain fitness (log2 ratio) -1 0 1at 1475.662 kb on + strand, within ABIE51_RS06860at 1475.662 kb on + strand, within ABIE51_RS06860at 1475.663 kb on - strand, within ABIE51_RS06860at 1475.663 kb on - strand, within ABIE51_RS06860at 1475.963 kb on - strand, within ABIE51_RS06860at 1475.963 kb on - strand, within ABIE51_RS06860at 1476.061 kb on + strand, within ABIE51_RS06860at 1476.061 kb on + strand, within ABIE51_RS06860at 1476.061 kb on + strand, within ABIE51_RS06860at 1476.061 kb on + strand, within ABIE51_RS06860at 1476.062 kb on - strand, within ABIE51_RS06860at 1476.062 kb on - strand, within ABIE51_RS06860at 1476.062 kb on - strand, within ABIE51_RS06860at 1476.293 kb on + strand, within ABIE51_RS06860at 1476.293 kb on + strand, within ABIE51_RS06860at 1476.293 kb on + strand, within ABIE51_RS06860at 1476.293 kb on + strand, within ABIE51_RS06860at 1476.294 kb on - strand, within ABIE51_RS06860at 1476.294 kb on - strand, within ABIE51_RS06860at 1476.297 kb on + strand, within ABIE51_RS06860at 1476.297 kb on + strand, within ABIE51_RS06860at 1476.297 kb on + strand, within ABIE51_RS06860at 1476.298 kb on - strand, within ABIE51_RS06860at 1476.298 kb on - strand, within ABIE51_RS06860at 1476.298 kb on - strand, within ABIE51_RS06860at 1476.298 kb on - strand, within ABIE51_RS06860at 1476.459 kb on + strand, within ABIE51_RS06865at 1476.459 kb on + strand, within ABIE51_RS06865at 1476.534 kb on + strand, within ABIE51_RS06865at 1476.535 kb on - strand, within ABIE51_RS06865at 1476.750 kb on - strand, within ABIE51_RS06865at 1476.756 kb on + strand, within ABIE51_RS06865at 1476.756 kb on + strand, within ABIE51_RS06865at 1476.756 kb on + strand, within ABIE51_RS06865at 1476.759 kb on + strand, within ABIE51_RS06865at 1476.759 kb on + strand, within ABIE51_RS06865at 1476.760 kb on - strand, within ABIE51_RS06865at 1476.858 kb on + strand, within ABIE51_RS06865at 1476.859 kb on - strand, within ABIE51_RS06865at 1476.859 kb on - strand, within ABIE51_RS06865at 1476.859 kb on - strand, within ABIE51_RS06865at 1476.859 kb on - strand, within ABIE51_RS06865at 1476.918 kb on + strand, within ABIE51_RS06865at 1477.066 kb on - strand, within ABIE51_RS06865at 1477.066 kb on - strand, within ABIE51_RS06865at 1477.162 kb on + strand, within ABIE51_RS06865at 1477.162 kb on + strand, within ABIE51_RS06865at 1477.163 kb on - strand, within ABIE51_RS06865at 1477.164 kb on + strand, within ABIE51_RS06865at 1477.165 kb on - strand, within ABIE51_RS06865at 1477.165 kb on - strand, within ABIE51_RS06865at 1477.269 kb on + strand, within ABIE51_RS06865at 1477.270 kb on - strand, within ABIE51_RS06865at 1477.270 kb on - strand, within ABIE51_RS06865at 1477.270 kb on - strand, within ABIE51_RS06865at 1477.299 kb on + strand, within ABIE51_RS06865at 1477.299 kb on + strand, within ABIE51_RS06865at 1477.299 kb on + strand, within ABIE51_RS06865at 1477.350 kb on + strand, within ABIE51_RS06865at 1477.351 kb on - strand, within ABIE51_RS06865at 1477.351 kb on - strand, within ABIE51_RS06865at 1477.713 kb on + strand, within ABIE51_RS06870at 1477.713 kb on + strand, within ABIE51_RS06870at 1477.714 kb on - strand, within ABIE51_RS06870at 1477.714 kb on - strand, within ABIE51_RS06870at 1477.714 kb on - strand, within ABIE51_RS06870at 1477.714 kb on - strand, within ABIE51_RS06870at 1477.714 kb on - strand, within ABIE51_RS06870at 1477.787 kb on + strand, within ABIE51_RS06870at 1477.788 kb on - strand, within ABIE51_RS06870at 1477.808 kb on - strand, within ABIE51_RS06870at 1477.982 kb on + strand, within ABIE51_RS06870at 1477.982 kb on + strand, within ABIE51_RS06870at 1477.982 kb on + strand, within ABIE51_RS06870at 1477.983 kb on - strand, within ABIE51_RS06870at 1477.983 kb on - strand, within ABIE51_RS06870at 1477.983 kb on - strand, within ABIE51_RS06870at 1478.015 kb on + strand, within ABIE51_RS06870at 1478.015 kb on + strand, within ABIE51_RS06870at 1478.015 kb on + strand, within ABIE51_RS06870at 1478.016 kb on - strand, within ABIE51_RS06870at 1478.016 kb on - strand, within ABIE51_RS06870at 1478.021 kb on + strand, within ABIE51_RS06870at 1478.021 kb on + strand, within ABIE51_RS06870at 1478.075 kb on + strandat 1478.199 kb on + strand, within ABIE51_RS06875at 1478.200 kb on - strand, within ABIE51_RS06875at 1478.212 kb on + strand, within ABIE51_RS06875at 1478.212 kb on + strand, within ABIE51_RS06875at 1478.212 kb on + strand, within ABIE51_RS06875at 1478.213 kb on - strand, within ABIE51_RS06875at 1478.269 kb on + strand, within ABIE51_RS06875at 1478.270 kb on - strand, within ABIE51_RS06875at 1478.270 kb on - strand, within ABIE51_RS06875at 1478.284 kb on - strand, within ABIE51_RS06875at 1478.458 kb on + strand, within ABIE51_RS06875at 1478.459 kb on - strand, within ABIE51_RS06875at 1478.459 kb on - strand, within ABIE51_RS06875at 1478.536 kb on + strand, within ABIE51_RS06875at 1478.536 kb on + strand, within ABIE51_RS06875at 1478.536 kb on + strand, within ABIE51_RS06875at 1478.537 kb on - strand, within ABIE51_RS06875at 1478.537 kb on - strand, within ABIE51_RS06875

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 10.6842 mM
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1,475,662 + ABIE51_RS06860 0.28 -0.9
1,475,662 + ABIE51_RS06860 0.28 +0.6
1,475,663 - ABIE51_RS06860 0.28 -0.6
1,475,663 - ABIE51_RS06860 0.28 +0.6
1,475,963 - ABIE51_RS06860 0.56 +0.1
1,475,963 - ABIE51_RS06860 0.56 -0.2
1,476,061 + ABIE51_RS06860 0.65 -0.3
1,476,061 + ABIE51_RS06860 0.65 -0.2
1,476,061 + ABIE51_RS06860 0.65 +0.4
1,476,061 + ABIE51_RS06860 0.65 -0.1
1,476,062 - ABIE51_RS06860 0.66 -0.2
1,476,062 - ABIE51_RS06860 0.66 -0.2
1,476,062 - ABIE51_RS06860 0.66 +0.1
1,476,293 + ABIE51_RS06860 0.87 -0.1
1,476,293 + ABIE51_RS06860 0.87 -0.5
1,476,293 + ABIE51_RS06860 0.87 -1.7
1,476,293 + ABIE51_RS06860 0.87 +0.1
1,476,294 - ABIE51_RS06860 0.87 -0.0
1,476,294 - ABIE51_RS06860 0.87 -0.0
1,476,297 + ABIE51_RS06860 0.88 -0.4
1,476,297 + ABIE51_RS06860 0.88 +0.7
1,476,297 + ABIE51_RS06860 0.88 +0.3
1,476,298 - ABIE51_RS06860 0.88 -0.2
1,476,298 - ABIE51_RS06860 0.88 -0.7
1,476,298 - ABIE51_RS06860 0.88 +0.0
1,476,298 - ABIE51_RS06860 0.88 -0.3
1,476,459 + ABIE51_RS06865 0.11 +0.1
1,476,459 + ABIE51_RS06865 0.11 +0.8
1,476,534 + ABIE51_RS06865 0.17 -0.1
1,476,535 - ABIE51_RS06865 0.17 +0.3
1,476,750 - ABIE51_RS06865 0.33 -0.0
1,476,756 + ABIE51_RS06865 0.34 +0.1
1,476,756 + ABIE51_RS06865 0.34 -0.0
1,476,756 + ABIE51_RS06865 0.34 +0.1
1,476,759 + ABIE51_RS06865 0.34 -0.2
1,476,759 + ABIE51_RS06865 0.34 +0.4
1,476,760 - ABIE51_RS06865 0.34 +0.7
1,476,858 + ABIE51_RS06865 0.42 -0.7
1,476,859 - ABIE51_RS06865 0.42 -0.2
1,476,859 - ABIE51_RS06865 0.42 +0.8
1,476,859 - ABIE51_RS06865 0.42 -0.2
1,476,859 - ABIE51_RS06865 0.42 +0.2
1,476,918 + ABIE51_RS06865 0.46 +0.2
1,477,066 - ABIE51_RS06865 0.58 +0.4
1,477,066 - ABIE51_RS06865 0.58 +0.4
1,477,162 + ABIE51_RS06865 0.65 -0.4
1,477,162 + ABIE51_RS06865 0.65 -0.0
1,477,163 - ABIE51_RS06865 0.65 +0.7
1,477,164 + ABIE51_RS06865 0.65 +1.1
1,477,165 - ABIE51_RS06865 0.65 +0.0
1,477,165 - ABIE51_RS06865 0.65 +1.1
1,477,269 + ABIE51_RS06865 0.73 +0.5
1,477,270 - ABIE51_RS06865 0.73 -0.3
1,477,270 - ABIE51_RS06865 0.73 -1.3
1,477,270 - ABIE51_RS06865 0.73 -1.0
1,477,299 + ABIE51_RS06865 0.76 -0.4
1,477,299 + ABIE51_RS06865 0.76 -0.5
1,477,299 + ABIE51_RS06865 0.76 -0.3
1,477,350 + ABIE51_RS06865 0.80 -0.9
1,477,351 - ABIE51_RS06865 0.80 +0.2
1,477,351 - ABIE51_RS06865 0.80 -0.0
1,477,713 + ABIE51_RS06870 0.11 -0.5
1,477,713 + ABIE51_RS06870 0.11 +0.8
1,477,714 - ABIE51_RS06870 0.11 +0.1
1,477,714 - ABIE51_RS06870 0.11 +0.1
1,477,714 - ABIE51_RS06870 0.11 -0.1
1,477,714 - ABIE51_RS06870 0.11 -0.1
1,477,714 - ABIE51_RS06870 0.11 +0.5
1,477,787 + ABIE51_RS06870 0.29 +0.1
1,477,788 - ABIE51_RS06870 0.29 +0.8
1,477,808 - ABIE51_RS06870 0.34 +0.1
1,477,982 + ABIE51_RS06870 0.77 -0.4
1,477,982 + ABIE51_RS06870 0.77 -0.9
1,477,982 + ABIE51_RS06870 0.77 -0.3
1,477,983 - ABIE51_RS06870 0.77 +0.0
1,477,983 - ABIE51_RS06870 0.77 +0.1
1,477,983 - ABIE51_RS06870 0.77 +0.4
1,478,015 + ABIE51_RS06870 0.85 +0.2
1,478,015 + ABIE51_RS06870 0.85 -0.3
1,478,015 + ABIE51_RS06870 0.85 +0.4
1,478,016 - ABIE51_RS06870 0.85 -0.4
1,478,016 - ABIE51_RS06870 0.85 +0.2
1,478,021 + ABIE51_RS06870 0.86 +0.1
1,478,021 + ABIE51_RS06870 0.86 +0.2
1,478,075 + -0.2
1,478,199 + ABIE51_RS06875 0.19 -0.1
1,478,200 - ABIE51_RS06875 0.20 -0.4
1,478,212 + ABIE51_RS06875 0.21 -0.6
1,478,212 + ABIE51_RS06875 0.21 -0.7
1,478,212 + ABIE51_RS06875 0.21 -0.5
1,478,213 - ABIE51_RS06875 0.22 -0.4
1,478,269 + ABIE51_RS06875 0.30 -0.4
1,478,270 - ABIE51_RS06875 0.30 -0.9
1,478,270 - ABIE51_RS06875 0.30 -0.4
1,478,284 - ABIE51_RS06875 0.32 -0.6
1,478,458 + ABIE51_RS06875 0.58 -0.8
1,478,459 - ABIE51_RS06875 0.58 -1.7
1,478,459 - ABIE51_RS06875 0.58 +0.0
1,478,536 + ABIE51_RS06875 0.69 -0.4
1,478,536 + ABIE51_RS06875 0.69 +0.5
1,478,536 + ABIE51_RS06875 0.69 +1.1
1,478,537 - ABIE51_RS06875 0.69 -0.1
1,478,537 - ABIE51_RS06875 0.69 +0.2

Or see this region's nucleotide sequence