Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS19170

Experiment: R2A with 1-octen-3-ol 0.904549 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS19160 and ABIE51_RS19165 are separated by 28 nucleotidesABIE51_RS19165 and ABIE51_RS19170 overlap by 1 nucleotidesABIE51_RS19170 and ABIE51_RS19175 are separated by 43 nucleotidesABIE51_RS19175 and ABIE51_RS19180 are separated by 9 nucleotides ABIE51_RS19160: ABIE51_RS19160 - amidohydrolase family protein, at 4,178,449 to 4,179,774 _RS19160 ABIE51_RS19165: ABIE51_RS19165 - heme o synthase, at 4,179,803 to 4,180,738 _RS19165 ABIE51_RS19170: ABIE51_RS19170 - COX15/CtaA family protein, at 4,180,738 to 4,181,904 _RS19170 ABIE51_RS19175: ABIE51_RS19175 - hypothetical protein, at 4,181,948 to 4,182,580 _RS19175 ABIE51_RS19180: ABIE51_RS19180 - SURF1 family protein, at 4,182,590 to 4,183,312 _RS19180 Position (kb) 4180 4181 4182Strain fitness (log2 ratio) -3 -2 -1 0 1at 4179.897 kb on + strand, within ABIE51_RS19165at 4179.897 kb on + strand, within ABIE51_RS19165at 4179.909 kb on + strand, within ABIE51_RS19165at 4179.909 kb on + strand, within ABIE51_RS19165at 4179.909 kb on + strand, within ABIE51_RS19165at 4179.909 kb on + strand, within ABIE51_RS19165at 4179.909 kb on + strand, within ABIE51_RS19165at 4179.910 kb on - strand, within ABIE51_RS19165at 4179.930 kb on + strand, within ABIE51_RS19165at 4179.930 kb on + strand, within ABIE51_RS19165at 4179.930 kb on + strand, within ABIE51_RS19165at 4179.931 kb on - strand, within ABIE51_RS19165at 4179.931 kb on - strand, within ABIE51_RS19165at 4179.931 kb on - strand, within ABIE51_RS19165at 4179.931 kb on - strand, within ABIE51_RS19165at 4179.966 kb on + strand, within ABIE51_RS19165at 4179.966 kb on + strand, within ABIE51_RS19165at 4180.008 kb on + strand, within ABIE51_RS19165at 4180.096 kb on - strand, within ABIE51_RS19165at 4180.096 kb on - strand, within ABIE51_RS19165at 4180.338 kb on + strand, within ABIE51_RS19165at 4180.339 kb on - strand, within ABIE51_RS19165at 4180.339 kb on - strand, within ABIE51_RS19165at 4180.347 kb on + strand, within ABIE51_RS19165at 4180.347 kb on + strand, within ABIE51_RS19165at 4180.348 kb on - strand, within ABIE51_RS19165at 4180.701 kb on + strandat 4180.702 kb on - strandat 4180.702 kb on - strandat 4180.955 kb on + strand, within ABIE51_RS19170at 4181.036 kb on + strand, within ABIE51_RS19170at 4181.037 kb on - strand, within ABIE51_RS19170at 4181.145 kb on - strand, within ABIE51_RS19170at 4181.507 kb on + strand, within ABIE51_RS19170at 4181.507 kb on + strand, within ABIE51_RS19170at 4181.507 kb on + strand, within ABIE51_RS19170at 4181.507 kb on + strand, within ABIE51_RS19170at 4181.507 kb on + strand, within ABIE51_RS19170at 4181.507 kb on + strand, within ABIE51_RS19170at 4181.508 kb on - strand, within ABIE51_RS19170at 4181.508 kb on - strand, within ABIE51_RS19170at 4181.508 kb on - strand, within ABIE51_RS19170at 4181.508 kb on - strand, within ABIE51_RS19170at 4181.508 kb on - strand, within ABIE51_RS19170at 4181.508 kb on - strand, within ABIE51_RS19170at 4181.508 kb on - strand, within ABIE51_RS19170at 4181.508 kb on - strand, within ABIE51_RS19170at 4181.564 kb on + strand, within ABIE51_RS19170at 4181.564 kb on + strand, within ABIE51_RS19170at 4181.564 kb on + strand, within ABIE51_RS19170at 4181.565 kb on - strand, within ABIE51_RS19170at 4181.738 kb on + strand, within ABIE51_RS19170at 4182.013 kb on - strand, within ABIE51_RS19175at 4182.034 kb on - strand, within ABIE51_RS19175at 4182.048 kb on + strand, within ABIE51_RS19175at 4182.049 kb on - strand, within ABIE51_RS19175at 4182.363 kb on + strand, within ABIE51_RS19175at 4182.364 kb on - strand, within ABIE51_RS19175at 4182.364 kb on - strand, within ABIE51_RS19175at 4182.591 kb on + strandat 4182.592 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM
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4,179,897 + ABIE51_RS19165 0.10 -0.5
4,179,897 + ABIE51_RS19165 0.10 -1.0
4,179,909 + ABIE51_RS19165 0.11 -3.0
4,179,909 + ABIE51_RS19165 0.11 -1.3
4,179,909 + ABIE51_RS19165 0.11 +0.3
4,179,909 + ABIE51_RS19165 0.11 -1.1
4,179,909 + ABIE51_RS19165 0.11 -1.2
4,179,910 - ABIE51_RS19165 0.11 -0.9
4,179,930 + ABIE51_RS19165 0.14 -1.9
4,179,930 + ABIE51_RS19165 0.14 -0.9
4,179,930 + ABIE51_RS19165 0.14 -1.6
4,179,931 - ABIE51_RS19165 0.14 -2.1
4,179,931 - ABIE51_RS19165 0.14 -1.3
4,179,931 - ABIE51_RS19165 0.14 -1.3
4,179,931 - ABIE51_RS19165 0.14 -1.3
4,179,966 + ABIE51_RS19165 0.17 -2.0
4,179,966 + ABIE51_RS19165 0.17 -0.9
4,180,008 + ABIE51_RS19165 0.22 -0.8
4,180,096 - ABIE51_RS19165 0.31 -0.8
4,180,096 - ABIE51_RS19165 0.31 -1.3
4,180,338 + ABIE51_RS19165 0.57 -0.5
4,180,339 - ABIE51_RS19165 0.57 -0.1
4,180,339 - ABIE51_RS19165 0.57 +0.1
4,180,347 + ABIE51_RS19165 0.58 -2.1
4,180,347 + ABIE51_RS19165 0.58 -0.6
4,180,348 - ABIE51_RS19165 0.58 +0.5
4,180,701 + +0.2
4,180,702 - -1.3
4,180,702 - -1.5
4,180,955 + ABIE51_RS19170 0.19 +0.1
4,181,036 + ABIE51_RS19170 0.26 -0.2
4,181,037 - ABIE51_RS19170 0.26 -0.3
4,181,145 - ABIE51_RS19170 0.35 -0.1
4,181,507 + ABIE51_RS19170 0.66 +0.4
4,181,507 + ABIE51_RS19170 0.66 +0.1
4,181,507 + ABIE51_RS19170 0.66 -0.0
4,181,507 + ABIE51_RS19170 0.66 -0.2
4,181,507 + ABIE51_RS19170 0.66 -0.6
4,181,507 + ABIE51_RS19170 0.66 +0.4
4,181,508 - ABIE51_RS19170 0.66 -0.3
4,181,508 - ABIE51_RS19170 0.66 +0.6
4,181,508 - ABIE51_RS19170 0.66 -1.0
4,181,508 - ABIE51_RS19170 0.66 -0.1
4,181,508 - ABIE51_RS19170 0.66 -1.0
4,181,508 - ABIE51_RS19170 0.66 -0.4
4,181,508 - ABIE51_RS19170 0.66 -0.5
4,181,508 - ABIE51_RS19170 0.66 +0.3
4,181,564 + ABIE51_RS19170 0.71 -0.9
4,181,564 + ABIE51_RS19170 0.71 -0.9
4,181,564 + ABIE51_RS19170 0.71 -0.7
4,181,565 - ABIE51_RS19170 0.71 -1.5
4,181,738 + ABIE51_RS19170 0.86 -0.4
4,182,013 - ABIE51_RS19175 0.10 +0.4
4,182,034 - ABIE51_RS19175 0.14 -0.2
4,182,048 + ABIE51_RS19175 0.16 +0.2
4,182,049 - ABIE51_RS19175 0.16 +0.4
4,182,363 + ABIE51_RS19175 0.66 -0.2
4,182,364 - ABIE51_RS19175 0.66 -0.2
4,182,364 - ABIE51_RS19175 0.66 -0.2
4,182,591 + +0.3
4,182,592 - -0.1

Or see this region's nucleotide sequence