Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS14660

Experiment: R2A with 1-octen-3-ol 0.904549 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS14655 and ABIE51_RS14660 are separated by 386 nucleotidesABIE51_RS14660 and ABIE51_RS14665 are separated by 198 nucleotides ABIE51_RS14655: ABIE51_RS14655 - ESPR-type extended signal peptide-containing protein, at 3,177,052 to 3,181,851 _RS14655 ABIE51_RS14660: ABIE51_RS14660 - alpha/beta fold hydrolase, at 3,182,238 to 3,183,119 _RS14660 ABIE51_RS14665: ABIE51_RS14665 - glycosyltransferase family 4 protein, at 3,183,318 to 3,184,376 _RS14665 Position (kb) 3182 3183 3184Strain fitness (log2 ratio) -1 0 1at 3181.293 kb on + strand, within ABIE51_RS14655at 3181.293 kb on + strand, within ABIE51_RS14655at 3181.294 kb on - strand, within ABIE51_RS14655at 3181.294 kb on - strand, within ABIE51_RS14655at 3181.517 kb on + strandat 3181.517 kb on + strandat 3181.518 kb on - strandat 3181.518 kb on - strandat 3181.934 kb on - strandat 3181.936 kb on - strandat 3181.936 kb on - strandat 3181.948 kb on + strandat 3182.019 kb on - strandat 3182.026 kb on + strandat 3182.027 kb on - strandat 3182.027 kb on - strandat 3182.027 kb on - strandat 3182.722 kb on + strand, within ABIE51_RS14660at 3182.786 kb on - strand, within ABIE51_RS14660at 3182.949 kb on + strand, within ABIE51_RS14660at 3183.042 kb on + strandat 3183.043 kb on - strandat 3183.224 kb on + strandat 3183.225 kb on - strandat 3183.225 kb on - strandat 3183.225 kb on - strandat 3183.225 kb on - strandat 3183.237 kb on + strandat 3183.369 kb on + strandat 3183.370 kb on - strandat 3183.370 kb on - strandat 3183.699 kb on + strand, within ABIE51_RS14665at 3183.699 kb on + strand, within ABIE51_RS14665at 3183.700 kb on - strand, within ABIE51_RS14665at 3183.700 kb on - strand, within ABIE51_RS14665at 3183.700 kb on - strand, within ABIE51_RS14665at 3183.840 kb on + strand, within ABIE51_RS14665at 3183.960 kb on + strand, within ABIE51_RS14665at 3183.961 kb on - strand, within ABIE51_RS14665at 3184.008 kb on + strand, within ABIE51_RS14665at 3184.009 kb on - strand, within ABIE51_RS14665

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM
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3,181,293 + ABIE51_RS14655 0.88 -0.0
3,181,293 + ABIE51_RS14655 0.88 -0.6
3,181,294 - ABIE51_RS14655 0.88 -0.4
3,181,294 - ABIE51_RS14655 0.88 +0.7
3,181,517 + +0.2
3,181,517 + -0.2
3,181,518 - -0.9
3,181,518 - +0.5
3,181,934 - +0.1
3,181,936 - +0.1
3,181,936 - +0.3
3,181,948 + +0.2
3,182,019 - -0.4
3,182,026 + -0.8
3,182,027 - -0.3
3,182,027 - +0.2
3,182,027 - -1.5
3,182,722 + ABIE51_RS14660 0.55 -0.0
3,182,786 - ABIE51_RS14660 0.62 +0.9
3,182,949 + ABIE51_RS14660 0.81 -0.3
3,183,042 + +0.1
3,183,043 - +0.4
3,183,224 + -0.1
3,183,225 - -0.7
3,183,225 - -0.0
3,183,225 - -0.7
3,183,225 - +0.7
3,183,237 + -0.7
3,183,369 + +0.1
3,183,370 - -0.2
3,183,370 - +0.8
3,183,699 + ABIE51_RS14665 0.36 -1.3
3,183,699 + ABIE51_RS14665 0.36 +0.1
3,183,700 - ABIE51_RS14665 0.36 -0.4
3,183,700 - ABIE51_RS14665 0.36 +0.5
3,183,700 - ABIE51_RS14665 0.36 -0.0
3,183,840 + ABIE51_RS14665 0.49 +0.3
3,183,960 + ABIE51_RS14665 0.61 +0.0
3,183,961 - ABIE51_RS14665 0.61 -0.5
3,184,008 + ABIE51_RS14665 0.65 -0.1
3,184,009 - ABIE51_RS14665 0.65 -0.2

Or see this region's nucleotide sequence