Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS13725

Experiment: R2A with 1-octen-3-ol 0.904549 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS13720 and ABIE51_RS13725 are separated by 69 nucleotidesABIE51_RS13725 and ABIE51_RS13730 are separated by 19 nucleotides ABIE51_RS13720: ABIE51_RS13720 - aldehyde dehydrogenase family protein, at 2,974,029 to 2,975,561 _RS13720 ABIE51_RS13725: ABIE51_RS13725 - quinone-dependent dihydroorotate dehydrogenase, at 2,975,631 to 2,976,689 _RS13725 ABIE51_RS13730: ABIE51_RS13730 - UDP-N-acetylmuramate dehydrogenase, at 2,976,709 to 2,977,749 _RS13730 Position (kb) 2975 2976 2977Strain fitness (log2 ratio) -3 -2 -1 0 1at 2974.992 kb on + strand, within ABIE51_RS13720at 2974.992 kb on + strand, within ABIE51_RS13720at 2975.079 kb on + strand, within ABIE51_RS13720at 2975.238 kb on + strand, within ABIE51_RS13720at 2975.238 kb on + strand, within ABIE51_RS13720at 2975.239 kb on - strand, within ABIE51_RS13720at 2975.239 kb on - strand, within ABIE51_RS13720at 2975.250 kb on + strand, within ABIE51_RS13720at 2975.250 kb on + strand, within ABIE51_RS13720at 2975.484 kb on + strandat 2975.484 kb on + strandat 2975.485 kb on - strandat 2975.514 kb on + strandat 2975.515 kb on - strandat 2975.559 kb on + strandat 2975.560 kb on - strandat 2975.593 kb on + strandat 2975.594 kb on - strandat 2976.582 kb on + strand, within ABIE51_RS13725at 2976.582 kb on + strand, within ABIE51_RS13725at 2976.685 kb on + strandat 2976.685 kb on + strandat 2976.686 kb on - strandat 2976.686 kb on - strandat 2976.686 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM
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2,974,992 + ABIE51_RS13720 0.63 +0.7
2,974,992 + ABIE51_RS13720 0.63 -1.0
2,975,079 + ABIE51_RS13720 0.68 -0.3
2,975,238 + ABIE51_RS13720 0.79 -2.5
2,975,238 + ABIE51_RS13720 0.79 -0.3
2,975,239 - ABIE51_RS13720 0.79 -0.3
2,975,239 - ABIE51_RS13720 0.79 -2.4
2,975,250 + ABIE51_RS13720 0.80 -2.7
2,975,250 + ABIE51_RS13720 0.80 -3.3
2,975,484 + -1.7
2,975,484 + +0.7
2,975,485 - -1.6
2,975,514 + -1.5
2,975,515 - -1.8
2,975,559 + -0.3
2,975,560 - -0.2
2,975,593 + +0.1
2,975,594 - -0.2
2,976,582 + ABIE51_RS13725 0.90 +1.3
2,976,582 + ABIE51_RS13725 0.90 +0.3
2,976,685 + +0.3
2,976,685 + -0.2
2,976,686 - -2.0
2,976,686 - +0.1
2,976,686 - +1.3

Or see this region's nucleotide sequence