Experiment: R2A with 1-octen-3-ol 0.904549 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03625 and ABIE51_RS03630 are separated by 75 nucleotides ABIE51_RS03630 and ABIE51_RS03635 are separated by 74 nucleotides
ABIE51_RS03625: ABIE51_RS03625 - sugar porter family MFS transporter, at 792,469 to 793,899
_RS03625
ABIE51_RS03630: ABIE51_RS03630 - LacI family DNA-binding transcriptional regulator, at 793,975 to 795,051
_RS03630
ABIE51_RS03635: ABIE51_RS03635 - alpha-glucuronidase family glycosyl hydrolase, at 795,126 to 797,363
_RS03635
Position (kb) 793
794
795
796 Strain fitness (log2 ratio) -1
0
1 at 793.108 kb on + strand, within ABIE51_RS03625 at 793.342 kb on + strand, within ABIE51_RS03625 at 793.342 kb on + strand, within ABIE51_RS03625 at 793.342 kb on + strand, within ABIE51_RS03625 at 793.343 kb on - strand, within ABIE51_RS03625 at 793.343 kb on - strand, within ABIE51_RS03625 at 793.343 kb on - strand, within ABIE51_RS03625 at 793.811 kb on - strand at 793.811 kb on - strand at 793.811 kb on - strand at 793.835 kb on + strand at 793.853 kb on - strand at 793.853 kb on - strand at 793.858 kb on + strand at 793.858 kb on + strand at 793.858 kb on + strand at 793.859 kb on - strand at 793.976 kb on + strand at 793.976 kb on + strand at 793.977 kb on - strand at 794.187 kb on + strand, within ABIE51_RS03630 at 794.188 kb on - strand, within ABIE51_RS03630 at 794.357 kb on + strand, within ABIE51_RS03630 at 794.357 kb on + strand, within ABIE51_RS03630 at 794.468 kb on + strand, within ABIE51_RS03630 at 794.714 kb on + strand, within ABIE51_RS03630 at 794.714 kb on + strand, within ABIE51_RS03630 at 794.714 kb on + strand, within ABIE51_RS03630 at 794.715 kb on - strand, within ABIE51_RS03630 at 794.715 kb on - strand, within ABIE51_RS03630 at 794.816 kb on + strand, within ABIE51_RS03630 at 794.816 kb on + strand, within ABIE51_RS03630 at 794.817 kb on - strand, within ABIE51_RS03630 at 794.817 kb on - strand, within ABIE51_RS03630 at 794.817 kb on - strand, within ABIE51_RS03630 at 794.889 kb on - strand, within ABIE51_RS03630 at 795.146 kb on - strand at 795.176 kb on - strand at 795.176 kb on - strand at 795.816 kb on + strand, within ABIE51_RS03635 at 795.900 kb on + strand, within ABIE51_RS03635 at 795.901 kb on - strand, within ABIE51_RS03635
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM remove 793,108 + ABIE51_RS03625 0.45 -0.2 793,342 + ABIE51_RS03625 0.61 +0.3 793,342 + ABIE51_RS03625 0.61 -0.4 793,342 + ABIE51_RS03625 0.61 -0.1 793,343 - ABIE51_RS03625 0.61 -0.5 793,343 - ABIE51_RS03625 0.61 -0.1 793,343 - ABIE51_RS03625 0.61 +0.1 793,811 - +0.1 793,811 - +0.2 793,811 - -0.5 793,835 + +0.4 793,853 - +0.2 793,853 - +0.2 793,858 + +0.1 793,858 + +0.4 793,858 + -0.2 793,859 - +0.2 793,976 + +0.9 793,976 + +1.0 793,977 - +0.7 794,187 + ABIE51_RS03630 0.20 +0.8 794,188 - ABIE51_RS03630 0.20 +0.9 794,357 + ABIE51_RS03630 0.35 +0.2 794,357 + ABIE51_RS03630 0.35 +0.4 794,468 + ABIE51_RS03630 0.46 +0.0 794,714 + ABIE51_RS03630 0.69 +1.1 794,714 + ABIE51_RS03630 0.69 +0.3 794,714 + ABIE51_RS03630 0.69 +0.1 794,715 - ABIE51_RS03630 0.69 +0.1 794,715 - ABIE51_RS03630 0.69 -0.1 794,816 + ABIE51_RS03630 0.78 -0.1 794,816 + ABIE51_RS03630 0.78 +0.8 794,817 - ABIE51_RS03630 0.78 +0.4 794,817 - ABIE51_RS03630 0.78 -0.1 794,817 - ABIE51_RS03630 0.78 -0.3 794,889 - ABIE51_RS03630 0.85 +0.1 795,146 - +0.3 795,176 - -0.3 795,176 - -0.1 795,816 + ABIE51_RS03635 0.31 -0.1 795,900 + ABIE51_RS03635 0.35 -0.1 795,901 - ABIE51_RS03635 0.35 +0.6
Or see this region's nucleotide sequence