Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS07185

Experiment: R2A with 1-octen-3-ol 0.904549 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS07175 and ABIE51_RS07180 overlap by 4 nucleotidesABIE51_RS07180 and ABIE51_RS07185 overlap by 1 nucleotidesABIE51_RS07185 and ABIE51_RS07190 overlap by 8 nucleotidesABIE51_RS07190 and ABIE51_RS07195 are separated by 220 nucleotides ABIE51_RS07175: ABIE51_RS07175 - HNH endonuclease signature motif containing protein, at 1,532,890 to 1,533,228 _RS07175 ABIE51_RS07180: ABIE51_RS07180 - DNA cytosine methyltransferase, at 1,533,225 to 1,533,980 _RS07180 ABIE51_RS07185: ABIE51_RS07185 - DUF968 domain-containing protein, at 1,533,980 to 1,534,315 _RS07185 ABIE51_RS07190: ABIE51_RS07190 - SANT/Myb-like DNA-binding domain-containing protein, at 1,534,308 to 1,534,730 _RS07190 ABIE51_RS07195: ABIE51_RS07195 - hypothetical protein, at 1,534,951 to 1,535,349 _RS07195 Position (kb) 1533 1534 1535Strain fitness (log2 ratio) -2 -1 0 1 2at 1533.004 kb on - strand, within ABIE51_RS07175at 1533.004 kb on - strand, within ABIE51_RS07175at 1533.004 kb on - strand, within ABIE51_RS07175at 1533.027 kb on - strand, within ABIE51_RS07175at 1533.152 kb on - strand, within ABIE51_RS07175at 1533.152 kb on - strand, within ABIE51_RS07175at 1533.152 kb on - strand, within ABIE51_RS07175at 1533.234 kb on + strandat 1533.234 kb on + strandat 1533.235 kb on - strandat 1533.238 kb on - strandat 1533.402 kb on + strand, within ABIE51_RS07180at 1533.403 kb on - strand, within ABIE51_RS07180at 1533.403 kb on - strand, within ABIE51_RS07180at 1533.517 kb on + strand, within ABIE51_RS07180at 1533.518 kb on - strand, within ABIE51_RS07180at 1533.518 kb on - strand, within ABIE51_RS07180at 1533.518 kb on - strand, within ABIE51_RS07180at 1533.759 kb on - strand, within ABIE51_RS07180at 1533.995 kb on + strandat 1534.041 kb on - strand, within ABIE51_RS07185at 1534.105 kb on - strand, within ABIE51_RS07185at 1534.105 kb on - strand, within ABIE51_RS07185at 1534.105 kb on - strand, within ABIE51_RS07185at 1534.270 kb on - strand, within ABIE51_RS07185at 1534.270 kb on - strand, within ABIE51_RS07185at 1534.313 kb on + strandat 1534.362 kb on + strand, within ABIE51_RS07190at 1534.363 kb on - strand, within ABIE51_RS07190at 1534.363 kb on - strand, within ABIE51_RS07190at 1534.660 kb on - strand, within ABIE51_RS07190at 1534.660 kb on - strand, within ABIE51_RS07190at 1534.715 kb on - strandat 1534.770 kb on - strandat 1534.770 kb on - strandat 1534.824 kb on - strandat 1534.889 kb on - strandat 1534.898 kb on - strandat 1534.898 kb on - strandat 1534.918 kb on - strandat 1534.918 kb on - strandat 1535.035 kb on + strand, within ABIE51_RS07195at 1535.045 kb on + strand, within ABIE51_RS07195at 1535.046 kb on - strand, within ABIE51_RS07195at 1535.048 kb on + strand, within ABIE51_RS07195at 1535.049 kb on - strand, within ABIE51_RS07195at 1535.049 kb on - strand, within ABIE51_RS07195at 1535.057 kb on - strand, within ABIE51_RS07195at 1535.057 kb on - strand, within ABIE51_RS07195at 1535.091 kb on - strand, within ABIE51_RS07195at 1535.091 kb on - strand, within ABIE51_RS07195at 1535.204 kb on - strand, within ABIE51_RS07195at 1535.290 kb on + strand, within ABIE51_RS07195

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM
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1,533,004 - ABIE51_RS07175 0.34 +1.3
1,533,004 - ABIE51_RS07175 0.34 -0.8
1,533,004 - ABIE51_RS07175 0.34 -0.5
1,533,027 - ABIE51_RS07175 0.40 -0.2
1,533,152 - ABIE51_RS07175 0.77 -0.3
1,533,152 - ABIE51_RS07175 0.77 +0.0
1,533,152 - ABIE51_RS07175 0.77 +0.9
1,533,234 + -0.6
1,533,234 + +1.8
1,533,235 - -0.1
1,533,238 - -0.3
1,533,402 + ABIE51_RS07180 0.23 -0.1
1,533,403 - ABIE51_RS07180 0.24 +0.4
1,533,403 - ABIE51_RS07180 0.24 -0.1
1,533,517 + ABIE51_RS07180 0.39 -0.1
1,533,518 - ABIE51_RS07180 0.39 +0.0
1,533,518 - ABIE51_RS07180 0.39 -0.5
1,533,518 - ABIE51_RS07180 0.39 +0.7
1,533,759 - ABIE51_RS07180 0.71 +0.5
1,533,995 + -0.4
1,534,041 - ABIE51_RS07185 0.18 -1.0
1,534,105 - ABIE51_RS07185 0.37 -0.8
1,534,105 - ABIE51_RS07185 0.37 +0.6
1,534,105 - ABIE51_RS07185 0.37 +0.0
1,534,270 - ABIE51_RS07185 0.86 +0.0
1,534,270 - ABIE51_RS07185 0.86 +0.4
1,534,313 + -0.2
1,534,362 + ABIE51_RS07190 0.13 -0.2
1,534,363 - ABIE51_RS07190 0.13 +0.8
1,534,363 - ABIE51_RS07190 0.13 -0.2
1,534,660 - ABIE51_RS07190 0.83 +0.9
1,534,660 - ABIE51_RS07190 0.83 -2.0
1,534,715 - -0.8
1,534,770 - +0.5
1,534,770 - +0.1
1,534,824 - +0.0
1,534,889 - +0.5
1,534,898 - +0.1
1,534,898 - -0.9
1,534,918 - +0.3
1,534,918 - +0.2
1,535,035 + ABIE51_RS07195 0.21 +0.2
1,535,045 + ABIE51_RS07195 0.24 -2.0
1,535,046 - ABIE51_RS07195 0.24 -0.3
1,535,048 + ABIE51_RS07195 0.24 +0.8
1,535,049 - ABIE51_RS07195 0.25 -1.3
1,535,049 - ABIE51_RS07195 0.25 -0.6
1,535,057 - ABIE51_RS07195 0.27 +0.3
1,535,057 - ABIE51_RS07195 0.27 +0.3
1,535,091 - ABIE51_RS07195 0.35 -2.3
1,535,091 - ABIE51_RS07195 0.35 +0.4
1,535,204 - ABIE51_RS07195 0.63 +0.1
1,535,290 + ABIE51_RS07195 0.85 +1.9

Or see this region's nucleotide sequence