Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06465

Experiment: R2A with 1-octen-3-ol 0.904549 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS06455 and ABIE51_RS06460 overlap by 4 nucleotidesABIE51_RS06460 and ABIE51_RS06465 overlap by 4 nucleotidesABIE51_RS06465 and ABIE51_RS06470 overlap by 4 nucleotides ABIE51_RS06455: ABIE51_RS06455 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,379,159 to 1,379,872 _RS06455 ABIE51_RS06460: ABIE51_RS06460 - hypothetical protein, at 1,379,869 to 1,380,315 _RS06460 ABIE51_RS06465: ABIE51_RS06465 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,380,312 to 1,380,791 _RS06465 ABIE51_RS06470: ABIE51_RS06470 - tRNA pseudouridine(13) synthase TruD, at 1,380,788 to 1,381,840 _RS06470 Position (kb) 1380 1381Strain fitness (log2 ratio) -1 0 1at 1379.917 kb on - strand, within ABIE51_RS06460at 1381.007 kb on + strand, within ABIE51_RS06470at 1381.008 kb on - strand, within ABIE51_RS06470at 1381.274 kb on + strand, within ABIE51_RS06470at 1381.275 kb on - strand, within ABIE51_RS06470at 1381.275 kb on - strand, within ABIE51_RS06470at 1381.275 kb on - strand, within ABIE51_RS06470at 1381.275 kb on - strand, within ABIE51_RS06470at 1381.781 kb on + strandat 1381.781 kb on + strandat 1381.781 kb on + strandat 1381.781 kb on + strandat 1381.781 kb on + strandat 1381.781 kb on + strandat 1381.781 kb on + strandat 1381.781 kb on + strandat 1381.781 kb on + strandat 1381.781 kb on + strandat 1381.781 kb on + strandat 1381.781 kb on + strandat 1381.782 kb on - strandat 1381.782 kb on - strandat 1381.782 kb on - strandat 1381.782 kb on - strandat 1381.782 kb on - strandat 1381.782 kb on - strandat 1381.782 kb on - strandat 1381.782 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM
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1,379,917 - ABIE51_RS06460 0.11 -0.5
1,381,007 + ABIE51_RS06470 0.21 +0.1
1,381,008 - ABIE51_RS06470 0.21 -0.4
1,381,274 + ABIE51_RS06470 0.46 -0.1
1,381,275 - ABIE51_RS06470 0.46 +0.0
1,381,275 - ABIE51_RS06470 0.46 +0.8
1,381,275 - ABIE51_RS06470 0.46 -0.0
1,381,275 - ABIE51_RS06470 0.46 +0.6
1,381,781 + +0.5
1,381,781 + -0.2
1,381,781 + +0.6
1,381,781 + +0.1
1,381,781 + +0.3
1,381,781 + -0.1
1,381,781 + +0.2
1,381,781 + -0.1
1,381,781 + +0.8
1,381,781 + -0.1
1,381,781 + +0.4
1,381,781 + +0.7
1,381,782 - +0.7
1,381,782 - +0.2
1,381,782 - +0.3
1,381,782 - +0.3
1,381,782 - -0.3
1,381,782 - +0.1
1,381,782 - +0.2
1,381,782 - -0.4

Or see this region's nucleotide sequence