Experiment: R2A with 1-octen-3-ol 0.904549 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS06455 and ABIE51_RS06460 overlap by 4 nucleotides ABIE51_RS06460 and ABIE51_RS06465 overlap by 4 nucleotides ABIE51_RS06465 and ABIE51_RS06470 overlap by 4 nucleotides
ABIE51_RS06455: ABIE51_RS06455 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,379,159 to 1,379,872
_RS06455
ABIE51_RS06460: ABIE51_RS06460 - hypothetical protein, at 1,379,869 to 1,380,315
_RS06460
ABIE51_RS06465: ABIE51_RS06465 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,380,312 to 1,380,791
_RS06465
ABIE51_RS06470: ABIE51_RS06470 - tRNA pseudouridine(13) synthase TruD, at 1,380,788 to 1,381,840
_RS06470
Position (kb)
1380
1381 Strain fitness (log2 ratio)
-1
0
1 at 1379.917 kb on - strand, within ABIE51_RS06460 at 1381.007 kb on + strand, within ABIE51_RS06470 at 1381.008 kb on - strand, within ABIE51_RS06470 at 1381.274 kb on + strand, within ABIE51_RS06470 at 1381.275 kb on - strand, within ABIE51_RS06470 at 1381.275 kb on - strand, within ABIE51_RS06470 at 1381.275 kb on - strand, within ABIE51_RS06470 at 1381.275 kb on - strand, within ABIE51_RS06470 at 1381.781 kb on + strand at 1381.781 kb on + strand at 1381.781 kb on + strand at 1381.781 kb on + strand at 1381.781 kb on + strand at 1381.781 kb on + strand at 1381.781 kb on + strand at 1381.781 kb on + strand at 1381.781 kb on + strand at 1381.781 kb on + strand at 1381.781 kb on + strand at 1381.781 kb on + strand at 1381.782 kb on - strand at 1381.782 kb on - strand at 1381.782 kb on - strand at 1381.782 kb on - strand at 1381.782 kb on - strand at 1381.782 kb on - strand at 1381.782 kb on - strand at 1381.782 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM remove 1,379,917 - ABIE51_RS06460 0.11 -0.5 1,381,007 + ABIE51_RS06470 0.21 +0.1 1,381,008 - ABIE51_RS06470 0.21 -0.4 1,381,274 + ABIE51_RS06470 0.46 -0.1 1,381,275 - ABIE51_RS06470 0.46 +0.0 1,381,275 - ABIE51_RS06470 0.46 +0.8 1,381,275 - ABIE51_RS06470 0.46 -0.0 1,381,275 - ABIE51_RS06470 0.46 +0.6 1,381,781 + +0.5 1,381,781 + -0.2 1,381,781 + +0.6 1,381,781 + +0.1 1,381,781 + +0.3 1,381,781 + -0.1 1,381,781 + +0.2 1,381,781 + -0.1 1,381,781 + +0.8 1,381,781 + -0.1 1,381,781 + +0.4 1,381,781 + +0.7 1,381,782 - +0.7 1,381,782 - +0.2 1,381,782 - +0.3 1,381,782 - +0.3 1,381,782 - -0.3 1,381,782 - +0.1 1,381,782 - +0.2 1,381,782 - -0.4
Or see this region's nucleotide sequence