Experiment: R2A with 1-octen-3-ol 0.904549 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02880 and ABIE51_RS02885 are separated by 258 nucleotides ABIE51_RS02885 and ABIE51_RS02890 overlap by 14 nucleotides ABIE51_RS02890 and ABIE51_RS02895 are separated by 191 nucleotides
ABIE51_RS02880: ABIE51_RS02880 - TonB-dependent receptor, at 637,849 to 640,692
_RS02880
ABIE51_RS02885: ABIE51_RS02885 - sugar kinase, at 640,951 to 641,958
_RS02885
ABIE51_RS02890: ABIE51_RS02890 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 641,945 to 642,580
_RS02890
ABIE51_RS02895: ABIE51_RS02895 - HU family DNA-binding protein, at 642,772 to 643,155
_RS02895
Position (kb) 640
641
642 Strain fitness (log2 ratio) -2
-1
0
1 at 640.043 kb on + strand, within ABIE51_RS02880 at 640.044 kb on - strand, within ABIE51_RS02880 at 640.082 kb on + strand, within ABIE51_RS02880 at 640.692 kb on + strand at 640.692 kb on + strand at 640.692 kb on + strand at 640.692 kb on + strand at 640.693 kb on - strand at 640.693 kb on - strand at 640.693 kb on - strand at 640.717 kb on + strand at 640.718 kb on - strand at 640.718 kb on - strand at 640.759 kb on - strand at 640.759 kb on - strand at 640.759 kb on - strand at 640.770 kb on + strand at 641.109 kb on - strand, within ABIE51_RS02885 at 641.109 kb on - strand, within ABIE51_RS02885 at 641.109 kb on - strand, within ABIE51_RS02885 at 641.215 kb on + strand, within ABIE51_RS02885 at 641.215 kb on + strand, within ABIE51_RS02885 at 641.215 kb on + strand, within ABIE51_RS02885 at 641.216 kb on - strand, within ABIE51_RS02885 at 641.261 kb on - strand, within ABIE51_RS02885 at 641.261 kb on - strand, within ABIE51_RS02885 at 641.300 kb on - strand, within ABIE51_RS02885 at 641.741 kb on - strand, within ABIE51_RS02885 at 641.999 kb on + strand at 641.999 kb on + strand at 642.000 kb on - strand at 642.000 kb on - strand at 642.000 kb on - strand at 642.000 kb on - strand at 642.204 kb on + strand, within ABIE51_RS02890 at 642.269 kb on + strand, within ABIE51_RS02890 at 642.270 kb on - strand, within ABIE51_RS02890 at 642.452 kb on + strand, within ABIE51_RS02890 at 642.452 kb on + strand, within ABIE51_RS02890 at 642.453 kb on - strand, within ABIE51_RS02890 at 642.453 kb on - strand, within ABIE51_RS02890 at 642.453 kb on - strand, within ABIE51_RS02890 at 642.453 kb on - strand, within ABIE51_RS02890 at 642.654 kb on + strand at 642.708 kb on - strand at 642.708 kb on - strand at 642.722 kb on + strand at 642.722 kb on + strand at 642.722 kb on + strand at 642.722 kb on + strand at 642.723 kb on - strand at 642.723 kb on - strand at 642.723 kb on - strand at 642.723 kb on - strand at 642.733 kb on + strand at 642.757 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.772 kb on - strand at 642.772 kb on - strand at 642.772 kb on - strand at 642.772 kb on - strand at 642.772 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM remove 640,043 + ABIE51_RS02880 0.77 +0.0 640,044 - ABIE51_RS02880 0.77 -0.0 640,082 + ABIE51_RS02880 0.79 -0.1 640,692 + +0.0 640,692 + +0.1 640,692 + -0.2 640,692 + -1.0 640,693 - +0.1 640,693 - +0.3 640,693 - +0.0 640,717 + +1.1 640,718 - +0.2 640,718 - -0.1 640,759 - -0.5 640,759 - -0.1 640,759 - -0.1 640,770 + -0.7 641,109 - ABIE51_RS02885 0.16 -1.2 641,109 - ABIE51_RS02885 0.16 -0.4 641,109 - ABIE51_RS02885 0.16 -0.4 641,215 + ABIE51_RS02885 0.26 +0.9 641,215 + ABIE51_RS02885 0.26 -0.2 641,215 + ABIE51_RS02885 0.26 -0.3 641,216 - ABIE51_RS02885 0.26 +0.3 641,261 - ABIE51_RS02885 0.31 +0.1 641,261 - ABIE51_RS02885 0.31 -0.5 641,300 - ABIE51_RS02885 0.35 -0.4 641,741 - ABIE51_RS02885 0.78 -0.4 641,999 + -0.7 641,999 + -0.5 642,000 - -0.0 642,000 - -0.0 642,000 - -0.3 642,000 - -0.6 642,204 + ABIE51_RS02890 0.41 +0.1 642,269 + ABIE51_RS02890 0.51 -0.4 642,270 - ABIE51_RS02890 0.51 +0.0 642,452 + ABIE51_RS02890 0.80 -0.5 642,452 + ABIE51_RS02890 0.80 -0.4 642,453 - ABIE51_RS02890 0.80 -0.4 642,453 - ABIE51_RS02890 0.80 -0.5 642,453 - ABIE51_RS02890 0.80 -0.2 642,453 - ABIE51_RS02890 0.80 -0.1 642,654 + -0.6 642,708 - -0.2 642,708 - +1.1 642,722 + +0.9 642,722 + +1.6 642,722 + +0.5 642,722 + +0.8 642,723 - +0.9 642,723 - +0.2 642,723 - -0.4 642,723 - +0.5 642,733 + +0.4 642,757 + +0.6 642,771 + -0.0 642,771 + -2.4 642,771 + +0.2 642,771 + -0.5 642,771 + +0.2 642,771 + +0.0 642,771 + -1.1 642,771 + +0.3 642,771 + -0.6 642,772 - -1.1 642,772 - -0.4 642,772 - +0.9 642,772 - -0.7 642,772 - +1.7
Or see this region's nucleotide sequence