Experiment: R2A with 1-octen-3-ol 0.904549 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02495 and ABIE51_RS02500 are separated by 206 nucleotides ABIE51_RS02500 and ABIE51_RS02505 are separated by 1 nucleotides
ABIE51_RS02495: ABIE51_RS02495 - hypothetical protein, at 553,046 to 553,873
_RS02495
ABIE51_RS02500: ABIE51_RS02500 - lipocalin family protein, at 554,080 to 554,628
_RS02500
ABIE51_RS02505: ABIE51_RS02505 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 554,630 to 555,688
_RS02505
Position (kb) 554
555 Strain fitness (log2 ratio) -2
-1
0
1 at 553.090 kb on - strand at 553.172 kb on + strand, within ABIE51_RS02495 at 553.221 kb on + strand, within ABIE51_RS02495 at 553.221 kb on + strand, within ABIE51_RS02495 at 553.498 kb on - strand, within ABIE51_RS02495 at 553.638 kb on + strand, within ABIE51_RS02495 at 553.638 kb on + strand, within ABIE51_RS02495 at 553.715 kb on + strand, within ABIE51_RS02495 at 553.716 kb on - strand, within ABIE51_RS02495 at 553.716 kb on - strand, within ABIE51_RS02495 at 553.716 kb on - strand, within ABIE51_RS02495 at 553.716 kb on - strand, within ABIE51_RS02495 at 553.801 kb on + strand at 553.859 kb on - strand at 553.977 kb on - strand at 554.065 kb on + strand at 554.065 kb on + strand at 554.071 kb on + strand at 554.265 kb on - strand, within ABIE51_RS02500 at 554.292 kb on - strand, within ABIE51_RS02500 at 554.426 kb on - strand, within ABIE51_RS02500 at 554.426 kb on - strand, within ABIE51_RS02500 at 554.468 kb on + strand, within ABIE51_RS02500 at 554.469 kb on - strand, within ABIE51_RS02500 at 554.469 kb on - strand, within ABIE51_RS02500 at 554.510 kb on + strand, within ABIE51_RS02500 at 554.757 kb on + strand, within ABIE51_RS02505 at 554.758 kb on - strand, within ABIE51_RS02505 at 554.835 kb on + strand, within ABIE51_RS02505 at 554.976 kb on + strand, within ABIE51_RS02505 at 554.976 kb on + strand, within ABIE51_RS02505 at 554.986 kb on + strand, within ABIE51_RS02505 at 555.064 kb on - strand, within ABIE51_RS02505 at 555.339 kb on + strand, within ABIE51_RS02505 at 555.340 kb on - strand, within ABIE51_RS02505 at 555.394 kb on - strand, within ABIE51_RS02505 at 555.396 kb on + strand, within ABIE51_RS02505 at 555.396 kb on + strand, within ABIE51_RS02505 at 555.397 kb on - strand, within ABIE51_RS02505 at 555.397 kb on - strand, within ABIE51_RS02505 at 555.397 kb on - strand, within ABIE51_RS02505 at 555.408 kb on + strand, within ABIE51_RS02505 at 555.408 kb on + strand, within ABIE51_RS02505 at 555.409 kb on - strand, within ABIE51_RS02505 at 555.459 kb on + strand, within ABIE51_RS02505 at 555.460 kb on - strand, within ABIE51_RS02505
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM remove 553,090 - +0.2 553,172 + ABIE51_RS02495 0.15 -0.6 553,221 + ABIE51_RS02495 0.21 +0.0 553,221 + ABIE51_RS02495 0.21 +0.0 553,498 - ABIE51_RS02495 0.55 +0.4 553,638 + ABIE51_RS02495 0.71 -0.1 553,638 + ABIE51_RS02495 0.71 +0.1 553,715 + ABIE51_RS02495 0.81 +0.0 553,716 - ABIE51_RS02495 0.81 +0.7 553,716 - ABIE51_RS02495 0.81 +0.5 553,716 - ABIE51_RS02495 0.81 -0.6 553,716 - ABIE51_RS02495 0.81 -0.4 553,801 + +0.9 553,859 - -0.1 553,977 - -0.1 554,065 + +0.0 554,065 + -0.1 554,071 + +0.1 554,265 - ABIE51_RS02500 0.34 +0.5 554,292 - ABIE51_RS02500 0.39 -0.5 554,426 - ABIE51_RS02500 0.63 +0.9 554,426 - ABIE51_RS02500 0.63 +0.5 554,468 + ABIE51_RS02500 0.71 -0.4 554,469 - ABIE51_RS02500 0.71 -0.5 554,469 - ABIE51_RS02500 0.71 -0.1 554,510 + ABIE51_RS02500 0.78 +0.3 554,757 + ABIE51_RS02505 0.12 -0.5 554,758 - ABIE51_RS02505 0.12 +0.4 554,835 + ABIE51_RS02505 0.19 -0.0 554,976 + ABIE51_RS02505 0.33 +0.1 554,976 + ABIE51_RS02505 0.33 +0.7 554,986 + ABIE51_RS02505 0.34 +0.2 555,064 - ABIE51_RS02505 0.41 +0.1 555,339 + ABIE51_RS02505 0.67 -2.2 555,340 - ABIE51_RS02505 0.67 -1.0 555,394 - ABIE51_RS02505 0.72 +0.5 555,396 + ABIE51_RS02505 0.72 -2.2 555,396 + ABIE51_RS02505 0.72 -0.5 555,397 - ABIE51_RS02505 0.72 -0.2 555,397 - ABIE51_RS02505 0.72 +0.0 555,397 - ABIE51_RS02505 0.72 -0.0 555,408 + ABIE51_RS02505 0.73 +0.9 555,408 + ABIE51_RS02505 0.73 -0.1 555,409 - ABIE51_RS02505 0.74 +0.2 555,459 + ABIE51_RS02505 0.78 +0.1 555,460 - ABIE51_RS02505 0.78 -0.1
Or see this region's nucleotide sequence