Experiment: R2A with 1-octen-3-ol 0.904549 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01365 and ABIE51_RS01370 are separated by 133 nucleotides ABIE51_RS01370 and ABIE51_RS01375 are separated by 18 nucleotides ABIE51_RS01375 and ABIE51_RS01380 are separated by 394 nucleotides
ABIE51_RS01365: ABIE51_RS01365 - ATP-binding protein, at 292,749 to 293,801
_RS01365
ABIE51_RS01370: ABIE51_RS01370 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 293,935 to 296,115
_RS01370
ABIE51_RS01375: ABIE51_RS01375 - nuclear transport factor 2 family protein, at 296,134 to 296,571
_RS01375
ABIE51_RS01380: ABIE51_RS01380 - hypothetical protein, at 296,966 to 297,283
_RS01380
Position (kb) 293
294
295
296
297 Strain fitness (log2 ratio) -2
-1
0
1 at 293.812 kb on + strand at 293.812 kb on + strand at 294.337 kb on + strand, within ABIE51_RS01370 at 294.337 kb on + strand, within ABIE51_RS01370 at 294.337 kb on + strand, within ABIE51_RS01370 at 294.338 kb on - strand, within ABIE51_RS01370 at 294.338 kb on - strand, within ABIE51_RS01370 at 294.511 kb on + strand, within ABIE51_RS01370 at 294.512 kb on - strand, within ABIE51_RS01370 at 294.538 kb on + strand, within ABIE51_RS01370 at 294.538 kb on + strand, within ABIE51_RS01370 at 294.539 kb on - strand, within ABIE51_RS01370 at 294.539 kb on - strand, within ABIE51_RS01370 at 294.736 kb on + strand, within ABIE51_RS01370 at 294.737 kb on - strand, within ABIE51_RS01370 at 294.737 kb on - strand, within ABIE51_RS01370 at 294.737 kb on - strand, within ABIE51_RS01370 at 294.769 kb on + strand, within ABIE51_RS01370 at 294.977 kb on + strand, within ABIE51_RS01370 at 294.977 kb on + strand, within ABIE51_RS01370 at 294.978 kb on - strand, within ABIE51_RS01370 at 295.184 kb on - strand, within ABIE51_RS01370 at 295.351 kb on + strand, within ABIE51_RS01370 at 295.352 kb on - strand, within ABIE51_RS01370 at 295.352 kb on - strand, within ABIE51_RS01370 at 295.352 kb on - strand, within ABIE51_RS01370 at 295.352 kb on - strand, within ABIE51_RS01370 at 295.573 kb on + strand, within ABIE51_RS01370 at 295.574 kb on - strand, within ABIE51_RS01370 at 295.630 kb on + strand, within ABIE51_RS01370 at 295.630 kb on + strand, within ABIE51_RS01370 at 295.631 kb on - strand, within ABIE51_RS01370 at 295.631 kb on - strand, within ABIE51_RS01370 at 295.636 kb on + strand, within ABIE51_RS01370 at 295.636 kb on + strand, within ABIE51_RS01370 at 295.636 kb on + strand, within ABIE51_RS01370 at 295.636 kb on + strand, within ABIE51_RS01370 at 295.636 kb on + strand, within ABIE51_RS01370 at 295.636 kb on + strand, within ABIE51_RS01370 at 295.637 kb on - strand, within ABIE51_RS01370 at 295.637 kb on - strand, within ABIE51_RS01370 at 295.637 kb on - strand, within ABIE51_RS01370 at 295.637 kb on - strand, within ABIE51_RS01370 at 295.637 kb on - strand, within ABIE51_RS01370 at 295.637 kb on - strand, within ABIE51_RS01370 at 295.637 kb on - strand, within ABIE51_RS01370 at 295.723 kb on + strand, within ABIE51_RS01370 at 295.723 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.748 kb on - strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.874 kb on - strand, within ABIE51_RS01370 at 295.874 kb on - strand, within ABIE51_RS01370 at 295.874 kb on - strand, within ABIE51_RS01370 at 295.874 kb on - strand, within ABIE51_RS01370 at 295.874 kb on - strand, within ABIE51_RS01370 at 295.874 kb on - strand, within ABIE51_RS01370 at 295.875 kb on + strand, within ABIE51_RS01370 at 295.875 kb on + strand, within ABIE51_RS01370 at 295.875 kb on + strand, within ABIE51_RS01370 at 296.113 kb on + strand at 296.150 kb on + strand at 296.377 kb on - strand, within ABIE51_RS01375 at 296.377 kb on - strand, within ABIE51_RS01375 at 296.377 kb on - strand, within ABIE51_RS01375 at 296.463 kb on - strand, within ABIE51_RS01375 at 296.463 kb on - strand, within ABIE51_RS01375 at 296.585 kb on + strand at 296.585 kb on + strand at 296.585 kb on + strand at 296.586 kb on - strand at 296.586 kb on - strand at 296.665 kb on - strand at 296.728 kb on + strand at 296.729 kb on - strand at 296.900 kb on + strand at 296.900 kb on + strand at 296.900 kb on + strand at 296.900 kb on + strand at 296.900 kb on + strand at 296.900 kb on + strand at 296.967 kb on + strand at 296.967 kb on + strand at 296.967 kb on + strand at 296.967 kb on + strand at 296.967 kb on + strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.970 kb on - strand at 297.021 kb on + strand, within ABIE51_RS01380 at 297.021 kb on + strand, within ABIE51_RS01380 at 297.021 kb on + strand, within ABIE51_RS01380 at 297.021 kb on + strand, within ABIE51_RS01380 at 297.021 kb on + strand, within ABIE51_RS01380 at 297.021 kb on + strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.044 kb on + strand, within ABIE51_RS01380 at 297.044 kb on + strand, within ABIE51_RS01380 at 297.044 kb on + strand, within ABIE51_RS01380 at 297.057 kb on + strand, within ABIE51_RS01380 at 297.057 kb on + strand, within ABIE51_RS01380 at 297.058 kb on - strand, within ABIE51_RS01380 at 297.097 kb on + strand, within ABIE51_RS01380 at 297.097 kb on + strand, within ABIE51_RS01380 at 297.098 kb on - strand, within ABIE51_RS01380
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM remove 293,812 + +0.1 293,812 + +0.6 294,337 + ABIE51_RS01370 0.18 -0.0 294,337 + ABIE51_RS01370 0.18 -0.1 294,337 + ABIE51_RS01370 0.18 +0.2 294,338 - ABIE51_RS01370 0.18 -0.5 294,338 - ABIE51_RS01370 0.18 -0.4 294,511 + ABIE51_RS01370 0.26 +0.2 294,512 - ABIE51_RS01370 0.26 +1.0 294,538 + ABIE51_RS01370 0.28 -0.9 294,538 + ABIE51_RS01370 0.28 -0.0 294,539 - ABIE51_RS01370 0.28 +0.0 294,539 - ABIE51_RS01370 0.28 -0.3 294,736 + ABIE51_RS01370 0.37 -0.6 294,737 - ABIE51_RS01370 0.37 +0.1 294,737 - ABIE51_RS01370 0.37 -0.7 294,737 - ABIE51_RS01370 0.37 -0.2 294,769 + ABIE51_RS01370 0.38 -0.6 294,977 + ABIE51_RS01370 0.48 -0.3 294,977 + ABIE51_RS01370 0.48 -0.6 294,978 - ABIE51_RS01370 0.48 -0.4 295,184 - ABIE51_RS01370 0.57 -0.8 295,351 + ABIE51_RS01370 0.65 -1.3 295,352 - ABIE51_RS01370 0.65 +0.1 295,352 - ABIE51_RS01370 0.65 +0.6 295,352 - ABIE51_RS01370 0.65 -0.4 295,352 - ABIE51_RS01370 0.65 -0.3 295,573 + ABIE51_RS01370 0.75 -0.6 295,574 - ABIE51_RS01370 0.75 +1.0 295,630 + ABIE51_RS01370 0.78 -0.1 295,630 + ABIE51_RS01370 0.78 -0.7 295,631 - ABIE51_RS01370 0.78 +0.5 295,631 - ABIE51_RS01370 0.78 +0.1 295,636 + ABIE51_RS01370 0.78 -0.5 295,636 + ABIE51_RS01370 0.78 +0.2 295,636 + ABIE51_RS01370 0.78 -0.9 295,636 + ABIE51_RS01370 0.78 -0.5 295,636 + ABIE51_RS01370 0.78 -0.4 295,636 + ABIE51_RS01370 0.78 -0.8 295,637 - ABIE51_RS01370 0.78 -0.4 295,637 - ABIE51_RS01370 0.78 -0.3 295,637 - ABIE51_RS01370 0.78 +0.8 295,637 - ABIE51_RS01370 0.78 -0.0 295,637 - ABIE51_RS01370 0.78 -0.3 295,637 - ABIE51_RS01370 0.78 +0.2 295,637 - ABIE51_RS01370 0.78 +0.2 295,723 + ABIE51_RS01370 0.82 -0.3 295,723 + ABIE51_RS01370 0.82 -0.5 295,747 + ABIE51_RS01370 0.83 +0.2 295,747 + ABIE51_RS01370 0.83 -0.4 295,747 + ABIE51_RS01370 0.83 -0.1 295,747 + ABIE51_RS01370 0.83 -0.0 295,747 + ABIE51_RS01370 0.83 -0.1 295,747 + ABIE51_RS01370 0.83 +0.1 295,747 + ABIE51_RS01370 0.83 +0.6 295,747 + ABIE51_RS01370 0.83 -0.3 295,747 + ABIE51_RS01370 0.83 -0.7 295,748 - ABIE51_RS01370 0.83 -0.3 295,873 + ABIE51_RS01370 0.89 +0.1 295,873 + ABIE51_RS01370 0.89 -0.5 295,873 + ABIE51_RS01370 0.89 -0.0 295,873 + ABIE51_RS01370 0.89 -0.5 295,873 + ABIE51_RS01370 0.89 +0.2 295,873 + ABIE51_RS01370 0.89 -0.2 295,873 + ABIE51_RS01370 0.89 -0.1 295,873 + ABIE51_RS01370 0.89 -0.4 295,874 - ABIE51_RS01370 0.89 -0.1 295,874 - ABIE51_RS01370 0.89 +0.2 295,874 - ABIE51_RS01370 0.89 -0.0 295,874 - ABIE51_RS01370 0.89 -0.6 295,874 - ABIE51_RS01370 0.89 -0.5 295,874 - ABIE51_RS01370 0.89 -0.4 295,875 + ABIE51_RS01370 0.89 -0.7 295,875 + ABIE51_RS01370 0.89 -1.4 295,875 + ABIE51_RS01370 0.89 +0.5 296,113 + -0.0 296,150 + +1.0 296,377 - ABIE51_RS01375 0.55 -0.5 296,377 - ABIE51_RS01375 0.55 -0.4 296,377 - ABIE51_RS01375 0.55 -0.3 296,463 - ABIE51_RS01375 0.75 -0.1 296,463 - ABIE51_RS01375 0.75 +0.2 296,585 + -0.3 296,585 + +0.2 296,585 + +0.4 296,586 - -0.4 296,586 - +0.3 296,665 - +0.1 296,728 + +0.7 296,729 - -0.2 296,900 + -0.1 296,900 + -1.8 296,900 + -0.2 296,900 + +0.1 296,900 + +0.0 296,900 + -0.6 296,967 + +0.7 296,967 + -0.0 296,967 + -0.3 296,967 + -0.3 296,967 + -0.2 296,968 - +0.0 296,968 - +0.2 296,968 - -0.7 296,968 - +0.4 296,968 - +0.1 296,968 - -0.1 296,968 - +0.2 296,968 - +0.5 296,969 + +0.4 296,969 + -0.6 296,969 + -0.2 296,969 + -0.4 296,969 + +0.1 296,969 + +0.6 296,969 + -0.4 296,970 - +0.2 297,021 + ABIE51_RS01380 0.17 +0.0 297,021 + ABIE51_RS01380 0.17 +1.4 297,021 + ABIE51_RS01380 0.17 +0.3 297,021 + ABIE51_RS01380 0.17 +0.4 297,021 + ABIE51_RS01380 0.17 -0.0 297,021 + ABIE51_RS01380 0.17 -0.1 297,022 - ABIE51_RS01380 0.18 +0.0 297,022 - ABIE51_RS01380 0.18 -0.0 297,022 - ABIE51_RS01380 0.18 +0.4 297,022 - ABIE51_RS01380 0.18 +0.3 297,022 - ABIE51_RS01380 0.18 -0.6 297,022 - ABIE51_RS01380 0.18 -1.1 297,022 - ABIE51_RS01380 0.18 +0.6 297,022 - ABIE51_RS01380 0.18 -0.0 297,044 + ABIE51_RS01380 0.25 -0.0 297,044 + ABIE51_RS01380 0.25 -0.1 297,044 + ABIE51_RS01380 0.25 -0.5 297,057 + ABIE51_RS01380 0.29 +0.3 297,057 + ABIE51_RS01380 0.29 +0.3 297,058 - ABIE51_RS01380 0.29 +0.3 297,097 + ABIE51_RS01380 0.41 +0.6 297,097 + ABIE51_RS01380 0.41 -0.3 297,098 - ABIE51_RS01380 0.42 -0.0
Or see this region's nucleotide sequence