Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS04205

Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS04195 and ABIE51_RS04200 are separated by 12 nucleotidesABIE51_RS04200 and ABIE51_RS04205 are separated by 34 nucleotidesABIE51_RS04205 and ABIE51_RS04210 are separated by 33 nucleotidesABIE51_RS04210 and ABIE51_RS04215 are separated by 272 nucleotides ABIE51_RS04195: ABIE51_RS04195 - haloacid dehalogenase-like hydrolase, at 907,395 to 908,183 _RS04195 ABIE51_RS04200: ABIE51_RS04200 - zf-TFIIB domain-containing protein, at 908,196 to 908,567 _RS04200 ABIE51_RS04205: ABIE51_RS04205 - GNAT family N-acetyltransferase, at 908,602 to 909,036 _RS04205 ABIE51_RS04210: ABIE51_RS04210 - cAMP-activated global transcriptional regulator CRP, at 909,070 to 909,726 _RS04210 ABIE51_RS04215: ABIE51_RS04215 - adenosylmethionine decarboxylase, at 909,999 to 910,793 _RS04215 Position (kb) 908 909 910Strain fitness (log2 ratio) -3 -2 -1 0 1at 908.398 kb on + strand, within ABIE51_RS04200at 908.398 kb on + strand, within ABIE51_RS04200at 908.398 kb on + strand, within ABIE51_RS04200at 908.398 kb on + strand, within ABIE51_RS04200at 908.398 kb on + strand, within ABIE51_RS04200at 908.399 kb on - strand, within ABIE51_RS04200at 908.399 kb on - strand, within ABIE51_RS04200at 908.399 kb on - strand, within ABIE51_RS04200at 908.660 kb on + strand, within ABIE51_RS04205at 908.661 kb on - strand, within ABIE51_RS04205at 908.822 kb on + strand, within ABIE51_RS04205at 908.822 kb on + strand, within ABIE51_RS04205at 908.840 kb on + strand, within ABIE51_RS04205at 908.841 kb on - strand, within ABIE51_RS04205at 908.849 kb on + strand, within ABIE51_RS04205at 908.849 kb on + strand, within ABIE51_RS04205at 908.850 kb on - strand, within ABIE51_RS04205at 909.083 kb on + strandat 909.084 kb on - strandat 909.329 kb on - strand, within ABIE51_RS04210at 909.359 kb on + strand, within ABIE51_RS04210at 909.359 kb on + strand, within ABIE51_RS04210at 909.360 kb on - strand, within ABIE51_RS04210at 909.360 kb on - strand, within ABIE51_RS04210at 909.360 kb on - strand, within ABIE51_RS04210at 909.360 kb on - strand, within ABIE51_RS04210at 909.360 kb on - strand, within ABIE51_RS04210at 909.360 kb on - strand, within ABIE51_RS04210at 909.407 kb on + strand, within ABIE51_RS04210at 909.407 kb on + strand, within ABIE51_RS04210at 909.407 kb on + strand, within ABIE51_RS04210at 909.408 kb on - strand, within ABIE51_RS04210at 909.408 kb on - strand, within ABIE51_RS04210at 909.408 kb on - strand, within ABIE51_RS04210at 909.408 kb on - strand, within ABIE51_RS04210at 909.527 kb on + strand, within ABIE51_RS04210at 909.527 kb on + strand, within ABIE51_RS04210at 909.527 kb on + strand, within ABIE51_RS04210at 909.527 kb on + strand, within ABIE51_RS04210at 909.528 kb on - strand, within ABIE51_RS04210at 909.528 kb on - strand, within ABIE51_RS04210at 909.528 kb on - strand, within ABIE51_RS04210at 909.528 kb on - strand, within ABIE51_RS04210at 909.593 kb on + strand, within ABIE51_RS04210at 909.593 kb on + strand, within ABIE51_RS04210at 909.593 kb on + strand, within ABIE51_RS04210at 909.593 kb on + strand, within ABIE51_RS04210at 909.593 kb on + strand, within ABIE51_RS04210at 909.593 kb on + strand, within ABIE51_RS04210at 909.594 kb on - strand, within ABIE51_RS04210at 909.594 kb on - strand, within ABIE51_RS04210at 909.594 kb on - strand, within ABIE51_RS04210at 909.594 kb on - strand, within ABIE51_RS04210at 909.594 kb on - strand, within ABIE51_RS04210at 909.596 kb on + strand, within ABIE51_RS04210at 909.596 kb on + strand, within ABIE51_RS04210at 909.596 kb on + strand, within ABIE51_RS04210at 909.596 kb on + strand, within ABIE51_RS04210at 909.596 kb on + strand, within ABIE51_RS04210at 909.596 kb on + strand, within ABIE51_RS04210at 909.596 kb on + strand, within ABIE51_RS04210at 909.596 kb on + strand, within ABIE51_RS04210at 909.597 kb on - strand, within ABIE51_RS04210at 909.597 kb on - strand, within ABIE51_RS04210at 909.597 kb on - strand, within ABIE51_RS04210at 909.597 kb on - strand, within ABIE51_RS04210at 909.597 kb on - strand, within ABIE51_RS04210at 909.597 kb on - strand, within ABIE51_RS04210at 909.597 kb on - strand, within ABIE51_RS04210at 909.790 kb on + strandat 909.800 kb on + strandat 909.816 kb on + strandat 909.828 kb on + strandat 909.828 kb on + strandat 909.828 kb on + strandat 909.829 kb on - strandat 909.829 kb on - strandat 909.836 kb on + strandat 909.836 kb on + strandat 909.836 kb on + strandat 909.837 kb on - strandat 909.848 kb on + strandat 909.959 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM
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908,398 + ABIE51_RS04200 0.54 +0.5
908,398 + ABIE51_RS04200 0.54 +0.6
908,398 + ABIE51_RS04200 0.54 -0.1
908,398 + ABIE51_RS04200 0.54 +0.3
908,398 + ABIE51_RS04200 0.54 +0.0
908,399 - ABIE51_RS04200 0.55 +0.3
908,399 - ABIE51_RS04200 0.55 +1.7
908,399 - ABIE51_RS04200 0.55 +0.1
908,660 + ABIE51_RS04205 0.13 +1.1
908,661 - ABIE51_RS04205 0.14 +0.0
908,822 + ABIE51_RS04205 0.51 +0.2
908,822 + ABIE51_RS04205 0.51 +0.2
908,840 + ABIE51_RS04205 0.55 +0.5
908,841 - ABIE51_RS04205 0.55 -0.0
908,849 + ABIE51_RS04205 0.57 +0.2
908,849 + ABIE51_RS04205 0.57 -0.2
908,850 - ABIE51_RS04205 0.57 -0.0
909,083 + +0.3
909,084 - -0.2
909,329 - ABIE51_RS04210 0.39 -1.0
909,359 + ABIE51_RS04210 0.44 -0.3
909,359 + ABIE51_RS04210 0.44 -0.8
909,360 - ABIE51_RS04210 0.44 -0.7
909,360 - ABIE51_RS04210 0.44 -1.0
909,360 - ABIE51_RS04210 0.44 -0.9
909,360 - ABIE51_RS04210 0.44 -0.4
909,360 - ABIE51_RS04210 0.44 -1.5
909,360 - ABIE51_RS04210 0.44 -0.9
909,407 + ABIE51_RS04210 0.51 -0.9
909,407 + ABIE51_RS04210 0.51 -1.1
909,407 + ABIE51_RS04210 0.51 +0.9
909,408 - ABIE51_RS04210 0.51 -1.5
909,408 - ABIE51_RS04210 0.51 -1.5
909,408 - ABIE51_RS04210 0.51 -0.9
909,408 - ABIE51_RS04210 0.51 -0.9
909,527 + ABIE51_RS04210 0.70 -0.8
909,527 + ABIE51_RS04210 0.70 -1.0
909,527 + ABIE51_RS04210 0.70 -1.1
909,527 + ABIE51_RS04210 0.70 -0.5
909,528 - ABIE51_RS04210 0.70 -1.2
909,528 - ABIE51_RS04210 0.70 -0.3
909,528 - ABIE51_RS04210 0.70 -0.8
909,528 - ABIE51_RS04210 0.70 -0.5
909,593 + ABIE51_RS04210 0.80 -0.4
909,593 + ABIE51_RS04210 0.80 -1.0
909,593 + ABIE51_RS04210 0.80 -0.3
909,593 + ABIE51_RS04210 0.80 -1.1
909,593 + ABIE51_RS04210 0.80 -1.3
909,593 + ABIE51_RS04210 0.80 -0.9
909,594 - ABIE51_RS04210 0.80 -1.0
909,594 - ABIE51_RS04210 0.80 -0.6
909,594 - ABIE51_RS04210 0.80 -0.3
909,594 - ABIE51_RS04210 0.80 -0.8
909,594 - ABIE51_RS04210 0.80 -0.5
909,596 + ABIE51_RS04210 0.80 -0.9
909,596 + ABIE51_RS04210 0.80 -0.9
909,596 + ABIE51_RS04210 0.80 -1.6
909,596 + ABIE51_RS04210 0.80 +0.1
909,596 + ABIE51_RS04210 0.80 +0.9
909,596 + ABIE51_RS04210 0.80 +1.1
909,596 + ABIE51_RS04210 0.80 +0.1
909,596 + ABIE51_RS04210 0.80 -0.9
909,597 - ABIE51_RS04210 0.80 -0.9
909,597 - ABIE51_RS04210 0.80 -0.7
909,597 - ABIE51_RS04210 0.80 -0.9
909,597 - ABIE51_RS04210 0.80 -0.9
909,597 - ABIE51_RS04210 0.80 -1.3
909,597 - ABIE51_RS04210 0.80 -1.2
909,597 - ABIE51_RS04210 0.80 -0.9
909,790 + +1.0
909,800 + -0.0
909,816 + +0.0
909,828 + +0.0
909,828 + -2.9
909,828 + -1.2
909,829 - +1.4
909,829 - -0.7
909,836 + -1.6
909,836 + -0.3
909,836 + +0.3
909,837 - -2.2
909,848 + -0.5
909,959 + +0.9

Or see this region's nucleotide sequence