Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS07175

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS07165 and ABIE51_RS07170 are separated by 0 nucleotidesABIE51_RS07170 and ABIE51_RS07175 are separated by 89 nucleotidesABIE51_RS07175 and ABIE51_RS07180 overlap by 4 nucleotidesABIE51_RS07180 and ABIE51_RS07185 overlap by 1 nucleotides ABIE51_RS07165: ABIE51_RS07165 - DnaB-like helicase C-terminal domain-containing protein, at 1,531,331 to 1,532,596 _RS07165 ABIE51_RS07170: ABIE51_RS07170 - hypothetical protein, at 1,532,597 to 1,532,800 _RS07170 ABIE51_RS07175: ABIE51_RS07175 - HNH endonuclease signature motif containing protein, at 1,532,890 to 1,533,228 _RS07175 ABIE51_RS07180: ABIE51_RS07180 - DNA cytosine methyltransferase, at 1,533,225 to 1,533,980 _RS07180 ABIE51_RS07185: ABIE51_RS07185 - DUF968 domain-containing protein, at 1,533,980 to 1,534,315 _RS07185 Position (kb) 1532 1533 1534Strain fitness (log2 ratio) -1 0 1 2 3at 1531.913 kb on - strand, within ABIE51_RS07165at 1532.103 kb on + strand, within ABIE51_RS07165at 1532.104 kb on - strand, within ABIE51_RS07165at 1532.104 kb on - strand, within ABIE51_RS07165at 1532.135 kb on + strand, within ABIE51_RS07165at 1532.136 kb on - strand, within ABIE51_RS07165at 1532.136 kb on - strand, within ABIE51_RS07165at 1532.152 kb on - strand, within ABIE51_RS07165at 1532.226 kb on - strand, within ABIE51_RS07165at 1532.226 kb on - strand, within ABIE51_RS07165at 1532.460 kb on - strand, within ABIE51_RS07165at 1532.460 kb on - strand, within ABIE51_RS07165at 1532.460 kb on - strand, within ABIE51_RS07165at 1532.688 kb on - strand, within ABIE51_RS07170at 1532.771 kb on - strand, within ABIE51_RS07170at 1532.806 kb on - strandat 1532.823 kb on - strandat 1532.835 kb on - strandat 1532.894 kb on - strandat 1533.004 kb on - strand, within ABIE51_RS07175at 1533.004 kb on - strand, within ABIE51_RS07175at 1533.004 kb on - strand, within ABIE51_RS07175at 1533.027 kb on - strand, within ABIE51_RS07175at 1533.152 kb on - strand, within ABIE51_RS07175at 1533.152 kb on - strand, within ABIE51_RS07175at 1533.152 kb on - strand, within ABIE51_RS07175at 1533.234 kb on + strandat 1533.234 kb on + strandat 1533.235 kb on - strandat 1533.238 kb on - strandat 1533.402 kb on + strand, within ABIE51_RS07180at 1533.403 kb on - strand, within ABIE51_RS07180at 1533.403 kb on - strand, within ABIE51_RS07180at 1533.517 kb on + strand, within ABIE51_RS07180at 1533.518 kb on - strand, within ABIE51_RS07180at 1533.518 kb on - strand, within ABIE51_RS07180at 1533.518 kb on - strand, within ABIE51_RS07180at 1533.759 kb on - strand, within ABIE51_RS07180at 1533.995 kb on + strandat 1534.041 kb on - strand, within ABIE51_RS07185at 1534.105 kb on - strand, within ABIE51_RS07185at 1534.105 kb on - strand, within ABIE51_RS07185at 1534.105 kb on - strand, within ABIE51_RS07185

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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1,531,913 - ABIE51_RS07165 0.46 -0.1
1,532,103 + ABIE51_RS07165 0.61 +0.5
1,532,104 - ABIE51_RS07165 0.61 -0.1
1,532,104 - ABIE51_RS07165 0.61 +0.1
1,532,135 + ABIE51_RS07165 0.64 +0.4
1,532,136 - ABIE51_RS07165 0.64 +0.1
1,532,136 - ABIE51_RS07165 0.64 -0.2
1,532,152 - ABIE51_RS07165 0.65 +0.0
1,532,226 - ABIE51_RS07165 0.71 -0.0
1,532,226 - ABIE51_RS07165 0.71 -0.2
1,532,460 - ABIE51_RS07165 0.89 -0.5
1,532,460 - ABIE51_RS07165 0.89 +0.3
1,532,460 - ABIE51_RS07165 0.89 -0.1
1,532,688 - ABIE51_RS07170 0.45 +0.1
1,532,771 - ABIE51_RS07170 0.85 +0.6
1,532,806 - -0.5
1,532,823 - -1.0
1,532,835 - +0.9
1,532,894 - +0.1
1,533,004 - ABIE51_RS07175 0.34 +0.7
1,533,004 - ABIE51_RS07175 0.34 -0.7
1,533,004 - ABIE51_RS07175 0.34 -0.2
1,533,027 - ABIE51_RS07175 0.40 -0.2
1,533,152 - ABIE51_RS07175 0.77 +0.0
1,533,152 - ABIE51_RS07175 0.77 -0.2
1,533,152 - ABIE51_RS07175 0.77 +0.5
1,533,234 + -1.7
1,533,234 + +2.8
1,533,235 - -0.0
1,533,238 - -0.4
1,533,402 + ABIE51_RS07180 0.23 -0.3
1,533,403 - ABIE51_RS07180 0.24 +0.4
1,533,403 - ABIE51_RS07180 0.24 +0.1
1,533,517 + ABIE51_RS07180 0.39 +0.8
1,533,518 - ABIE51_RS07180 0.39 -0.2
1,533,518 - ABIE51_RS07180 0.39 +0.1
1,533,518 - ABIE51_RS07180 0.39 +1.0
1,533,759 - ABIE51_RS07180 0.71 +0.2
1,533,995 + -0.2
1,534,041 - ABIE51_RS07185 0.18 -0.6
1,534,105 - ABIE51_RS07185 0.37 +0.1
1,534,105 - ABIE51_RS07185 0.37 +1.8
1,534,105 - ABIE51_RS07185 0.37 +0.1

Or see this region's nucleotide sequence