Experiment: R2A with 1-octen-3-ol 1.3568235 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS14770 and ABIE51_RS14775 are separated by 114 nucleotides ABIE51_RS14775 and ABIE51_RS14780 are separated by 27 nucleotides ABIE51_RS14780 and ABIE51_RS14785 are separated by 95 nucleotides
ABIE51_RS14770: ABIE51_RS14770 - spermidine N1-acetyltransferase, at 3,211,090 to 3,211,674
_RS14770
ABIE51_RS14775: ABIE51_RS14775 - hypothetical protein, at 3,211,789 to 3,212,082
_RS14775
ABIE51_RS14780: ABIE51_RS14780 - hypothetical protein, at 3,212,110 to 3,212,568
_RS14780
ABIE51_RS14785: ABIE51_RS14785 - DUF2785 domain-containing protein, at 3,212,664 to 3,213,563
_RS14785
Position (kb) 3211
3212
3213 Strain fitness (log2 ratio) -1
0
1 at 3211.071 kb on + strand at 3211.072 kb on - strand at 3211.089 kb on - strand at 3211.259 kb on + strand, within ABIE51_RS14770 at 3211.260 kb on - strand, within ABIE51_RS14770 at 3211.260 kb on - strand, within ABIE51_RS14770 at 3211.301 kb on + strand, within ABIE51_RS14770 at 3211.310 kb on + strand, within ABIE51_RS14770 at 3211.335 kb on - strand, within ABIE51_RS14770 at 3211.367 kb on + strand, within ABIE51_RS14770 at 3211.524 kb on - strand, within ABIE51_RS14770 at 3211.524 kb on - strand, within ABIE51_RS14770 at 3211.524 kb on - strand, within ABIE51_RS14770 at 3211.554 kb on - strand, within ABIE51_RS14770 at 3211.554 kb on - strand, within ABIE51_RS14770 at 3211.749 kb on - strand at 3211.749 kb on - strand at 3212.433 kb on - strand, within ABIE51_RS14780 at 3212.559 kb on + strand at 3212.646 kb on - strand at 3212.646 kb on - strand at 3212.708 kb on + strand at 3212.746 kb on + strand at 3212.746 kb on + strand at 3212.747 kb on - strand at 3212.747 kb on - strand at 3212.897 kb on - strand, within ABIE51_RS14785 at 3212.938 kb on + strand, within ABIE51_RS14785 at 3212.938 kb on + strand, within ABIE51_RS14785 at 3212.938 kb on + strand, within ABIE51_RS14785
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM remove 3,211,071 + -0.3 3,211,072 - -0.0 3,211,089 - -0.4 3,211,259 + ABIE51_RS14770 0.29 -0.2 3,211,260 - ABIE51_RS14770 0.29 -0.2 3,211,260 - ABIE51_RS14770 0.29 -0.1 3,211,301 + ABIE51_RS14770 0.36 +0.1 3,211,310 + ABIE51_RS14770 0.38 -0.0 3,211,335 - ABIE51_RS14770 0.42 -0.1 3,211,367 + ABIE51_RS14770 0.47 -0.4 3,211,524 - ABIE51_RS14770 0.74 +0.2 3,211,524 - ABIE51_RS14770 0.74 -0.2 3,211,524 - ABIE51_RS14770 0.74 -0.4 3,211,554 - ABIE51_RS14770 0.79 +0.3 3,211,554 - ABIE51_RS14770 0.79 +0.3 3,211,749 - +0.1 3,211,749 - -0.2 3,212,433 - ABIE51_RS14780 0.70 +0.6 3,212,559 + +0.5 3,212,646 - +0.2 3,212,646 - -0.2 3,212,708 + +0.3 3,212,746 + +0.4 3,212,746 + -0.4 3,212,747 - -0.6 3,212,747 - +0.3 3,212,897 - ABIE51_RS14785 0.26 -0.1 3,212,938 + ABIE51_RS14785 0.30 +0.0 3,212,938 + ABIE51_RS14785 0.30 -0.2 3,212,938 + ABIE51_RS14785 0.30 -1.1
Or see this region's nucleotide sequence