Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06745

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS06735 and ABIE51_RS06740 are separated by 11 nucleotidesABIE51_RS06740 and ABIE51_RS06745 are separated by 39 nucleotidesABIE51_RS06745 and ABIE51_RS06750 are separated by 97 nucleotides ABIE51_RS06735: ABIE51_RS06735 - DNA polymerase III subunit delta, at 1,439,988 to 1,441,055 _RS06735 ABIE51_RS06740: ABIE51_RS06740 - nicotinate-nucleotide adenylyltransferase, at 1,441,067 to 1,441,744 _RS06740 ABIE51_RS06745: ABIE51_RS06745 - ribosome silencing factor, at 1,441,784 to 1,442,212 _RS06745 ABIE51_RS06750: ABIE51_RS06750 - alkaline phosphatase PhoX, at 1,442,310 to 1,443,860 _RS06750 Position (kb) 1441 1442 1443Strain fitness (log2 ratio) -3 -2 -1 0 1at 1441.082 kb on + strandat 1441.082 kb on + strandat 1441.709 kb on + strandat 1441.710 kb on - strandat 1441.740 kb on + strandat 1441.740 kb on + strandat 1441.740 kb on + strandat 1441.740 kb on + strandat 1441.740 kb on + strandat 1441.741 kb on - strandat 1441.743 kb on - strandat 1441.789 kb on + strandat 1441.790 kb on - strandat 1441.790 kb on - strandat 1441.937 kb on + strand, within ABIE51_RS06745at 1441.937 kb on + strand, within ABIE51_RS06745at 1441.937 kb on + strand, within ABIE51_RS06745at 1441.938 kb on - strand, within ABIE51_RS06745at 1441.938 kb on - strand, within ABIE51_RS06745at 1441.938 kb on - strand, within ABIE51_RS06745at 1442.124 kb on - strand, within ABIE51_RS06745at 1442.124 kb on - strand, within ABIE51_RS06745at 1442.351 kb on + strandat 1442.352 kb on - strandat 1442.432 kb on - strandat 1442.432 kb on - strandat 1442.506 kb on + strand, within ABIE51_RS06750at 1442.507 kb on - strand, within ABIE51_RS06750at 1442.557 kb on + strand, within ABIE51_RS06750at 1442.558 kb on - strand, within ABIE51_RS06750at 1442.779 kb on + strand, within ABIE51_RS06750at 1442.779 kb on + strand, within ABIE51_RS06750at 1442.779 kb on + strand, within ABIE51_RS06750at 1442.780 kb on - strand, within ABIE51_RS06750at 1442.780 kb on - strand, within ABIE51_RS06750at 1442.780 kb on - strand, within ABIE51_RS06750at 1442.873 kb on + strand, within ABIE51_RS06750at 1442.874 kb on - strand, within ABIE51_RS06750at 1442.945 kb on - strand, within ABIE51_RS06750at 1442.945 kb on - strand, within ABIE51_RS06750at 1442.945 kb on - strand, within ABIE51_RS06750at 1442.945 kb on - strand, within ABIE51_RS06750at 1443.037 kb on + strand, within ABIE51_RS06750at 1443.070 kb on + strand, within ABIE51_RS06750at 1443.106 kb on + strand, within ABIE51_RS06750at 1443.106 kb on + strand, within ABIE51_RS06750at 1443.107 kb on - strand, within ABIE51_RS06750at 1443.107 kb on - strand, within ABIE51_RS06750at 1443.107 kb on - strand, within ABIE51_RS06750

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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1,441,082 + -1.3
1,441,082 + -3.0
1,441,709 + -0.1
1,441,710 - -0.6
1,441,740 + +0.9
1,441,740 + -0.2
1,441,740 + -0.1
1,441,740 + +0.2
1,441,740 + +0.3
1,441,741 - -0.5
1,441,743 - -0.7
1,441,789 + -0.4
1,441,790 - -0.2
1,441,790 - -0.2
1,441,937 + ABIE51_RS06745 0.36 -0.8
1,441,937 + ABIE51_RS06745 0.36 -0.7
1,441,937 + ABIE51_RS06745 0.36 -0.2
1,441,938 - ABIE51_RS06745 0.36 -0.1
1,441,938 - ABIE51_RS06745 0.36 -0.0
1,441,938 - ABIE51_RS06745 0.36 -0.0
1,442,124 - ABIE51_RS06745 0.79 -0.6
1,442,124 - ABIE51_RS06745 0.79 +0.1
1,442,351 + -0.6
1,442,352 - +0.4
1,442,432 - -0.3
1,442,432 - -0.1
1,442,506 + ABIE51_RS06750 0.13 +0.1
1,442,507 - ABIE51_RS06750 0.13 +1.1
1,442,557 + ABIE51_RS06750 0.16 +0.2
1,442,558 - ABIE51_RS06750 0.16 +0.3
1,442,779 + ABIE51_RS06750 0.30 -0.0
1,442,779 + ABIE51_RS06750 0.30 -0.1
1,442,779 + ABIE51_RS06750 0.30 -0.9
1,442,780 - ABIE51_RS06750 0.30 +1.5
1,442,780 - ABIE51_RS06750 0.30 +0.3
1,442,780 - ABIE51_RS06750 0.30 -0.8
1,442,873 + ABIE51_RS06750 0.36 -0.1
1,442,874 - ABIE51_RS06750 0.36 +0.3
1,442,945 - ABIE51_RS06750 0.41 -0.2
1,442,945 - ABIE51_RS06750 0.41 -0.8
1,442,945 - ABIE51_RS06750 0.41 +0.4
1,442,945 - ABIE51_RS06750 0.41 -0.2
1,443,037 + ABIE51_RS06750 0.47 -1.0
1,443,070 + ABIE51_RS06750 0.49 -0.8
1,443,106 + ABIE51_RS06750 0.51 +0.3
1,443,106 + ABIE51_RS06750 0.51 -0.0
1,443,107 - ABIE51_RS06750 0.51 -0.1
1,443,107 - ABIE51_RS06750 0.51 -0.2
1,443,107 - ABIE51_RS06750 0.51 +0.1

Or see this region's nucleotide sequence