Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3720

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
4,162,789	+		Rv3719	0.34	+0.4
4,162,970	-		Rv3719	0.47	-0.1
4,162,970	-		Rv3719	0.47	-1.2
4,163,005	+		Rv3719	0.49	-2.2
4,163,006	-		Rv3719	0.50	-0.4
4,163,053	+		Rv3719	0.53	-2.0
4,163,071	+		Rv3719	0.54	+0.8
4,163,072	-		Rv3719	0.54	-0.7
4,163,072	-		Rv3719	0.54	-1.2
4,163,131	+		Rv3719	0.58	+0.2
4,163,472	+		Rv3719	0.83	+0.7
4,163,477	-		Rv3719	0.83	-0.5
4,163,477	-		Rv3719	0.83	-1.5
4,163,599	+				-0.1
4,163,642	-				+0.6
4,163,642	-				-2.7
4,163,663	-				+0.3
4,163,872	+		Rv3720	0.11	-0.7
4,163,873	-		Rv3720	0.11	+0.2
4,163,911	-		Rv3720	0.14	+1.1
4,163,941	+		Rv3720	0.16	-1.3
4,163,941	+		Rv3720	0.16	+0.3
4,163,941	+		Rv3720	0.16	-1.1
4,163,942	-		Rv3720	0.16	-0.6
4,164,055	+		Rv3720	0.25	-1.9
4,164,163	-		Rv3720	0.34	-1.3
4,164,213	+		Rv3720	0.38	-1.5
4,164,274	-		Rv3720	0.43	-1.5
4,164,320	-		Rv3720	0.46	-0.8
4,164,564	+		Rv3720	0.66	-0.8
4,164,564	+		Rv3720	0.66	-0.6
4,164,713	+		Rv3720	0.77	-0.6
4,164,716	+		Rv3720	0.78	-1.5
4,164,717	-		Rv3720	0.78	-0.5
4,164,876	+				-0.2
4,164,876	+				-0.1
4,164,877	-				-0.6
4,164,877	-				-0.0
4,164,922	+				+0.8
4,164,931	+				-2.3
4,164,931	+				-0.4