Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3683 and Rv3684 are separated by 62 nucleotides Rv3684 and GFF3829 are separated by 61 nucleotides GFF3829 and Rv3685c are separated by 680 nucleotides
Rv3683: Rv3683 - Conserved protein, at 4,124,417 to 4,125,376
Rv3683
Rv3684: Rv3684 - Probable lyase, at 4,125,439 to 4,126,479
Rv3684
GFF3829 - tRNA-Pro, at 4,126,541 to 4,126,614
GFF3829
Rv3685c: Rv3685c - Probable cytochrome P450 137 Cyp137, at 4,127,295 to 4,128,725
Rv3685c
Position (kb) 4125
4126
4127 Strain fitness (log2 ratio) -1
0
1
2 at 4124.489 kb on + strand at 4124.490 kb on - strand at 4124.596 kb on + strand, within Rv3683 at 4124.596 kb on + strand, within Rv3683 at 4124.596 kb on + strand, within Rv3683 at 4124.597 kb on - strand, within Rv3683 at 4124.597 kb on - strand, within Rv3683 at 4124.597 kb on - strand, within Rv3683 at 4124.597 kb on - strand, within Rv3683 at 4124.774 kb on + strand, within Rv3683 at 4124.775 kb on - strand, within Rv3683 at 4124.807 kb on + strand, within Rv3683 at 4124.898 kb on + strand, within Rv3683 at 4124.899 kb on - strand, within Rv3683 at 4124.899 kb on - strand, within Rv3683 at 4124.968 kb on + strand, within Rv3683 at 4124.968 kb on + strand, within Rv3683 at 4124.984 kb on + strand, within Rv3683 at 4125.086 kb on + strand, within Rv3683 at 4125.140 kb on + strand, within Rv3683 at 4125.158 kb on - strand, within Rv3683 at 4125.158 kb on - strand, within Rv3683 at 4125.158 kb on - strand, within Rv3683 at 4125.158 kb on - strand, within Rv3683 at 4125.390 kb on + strand at 4125.408 kb on - strand at 4125.487 kb on + strand at 4125.602 kb on - strand, within Rv3684 at 4125.608 kb on + strand, within Rv3684 at 4125.609 kb on - strand, within Rv3684 at 4125.609 kb on - strand, within Rv3684 at 4125.923 kb on - strand, within Rv3684 at 4126.012 kb on + strand, within Rv3684 at 4126.013 kb on - strand, within Rv3684 at 4126.085 kb on - strand, within Rv3684 at 4126.372 kb on + strand, within Rv3684 at 4126.373 kb on - strand, within Rv3684 at 4126.384 kb on + strand at 4126.385 kb on - strand at 4126.385 kb on - strand at 4126.521 kb on + strand at 4126.657 kb on - strand at 4126.657 kb on - strand at 4126.756 kb on + strand at 4126.756 kb on + strand at 4126.757 kb on - strand at 4126.757 kb on - strand at 4126.757 kb on - strand at 4126.877 kb on + strand at 4126.877 kb on + strand at 4126.878 kb on - strand at 4127.019 kb on - strand at 4127.142 kb on + strand at 4127.143 kb on - strand at 4127.422 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5 remove 4,124,489 + +0.2 4,124,490 - -0.1 4,124,596 + Rv3683 0.19 -0.6 4,124,596 + Rv3683 0.19 +0.3 4,124,596 + Rv3683 0.19 +1.9 4,124,597 - Rv3683 0.19 -0.1 4,124,597 - Rv3683 0.19 -0.6 4,124,597 - Rv3683 0.19 -0.1 4,124,597 - Rv3683 0.19 -1.3 4,124,774 + Rv3683 0.37 +0.8 4,124,775 - Rv3683 0.37 -0.6 4,124,807 + Rv3683 0.41 -0.3 4,124,898 + Rv3683 0.50 -0.8 4,124,899 - Rv3683 0.50 -0.7 4,124,899 - Rv3683 0.50 +0.2 4,124,968 + Rv3683 0.57 -0.3 4,124,968 + Rv3683 0.57 +0.1 4,124,984 + Rv3683 0.59 +1.4 4,125,086 + Rv3683 0.70 +0.2 4,125,140 + Rv3683 0.75 -0.3 4,125,158 - Rv3683 0.77 -0.9 4,125,158 - Rv3683 0.77 -1.4 4,125,158 - Rv3683 0.77 -1.0 4,125,158 - Rv3683 0.77 +1.3 4,125,390 + +0.3 4,125,408 - -0.2 4,125,487 + +0.4 4,125,602 - Rv3684 0.16 +1.8 4,125,608 + Rv3684 0.16 -0.3 4,125,609 - Rv3684 0.16 -0.4 4,125,609 - Rv3684 0.16 +1.1 4,125,923 - Rv3684 0.46 -0.2 4,126,012 + Rv3684 0.55 +0.4 4,126,013 - Rv3684 0.55 -0.7 4,126,085 - Rv3684 0.62 -0.4 4,126,372 + Rv3684 0.90 -0.4 4,126,373 - Rv3684 0.90 +2.4 4,126,384 + -0.4 4,126,385 - -0.2 4,126,385 - -0.6 4,126,521 + -1.6 4,126,657 - -1.4 4,126,657 - +0.6 4,126,756 + -0.5 4,126,756 + -0.0 4,126,757 - +1.2 4,126,757 - +0.0 4,126,757 - +0.2 4,126,877 + -0.2 4,126,877 + +0.1 4,126,878 - -0.0 4,127,019 - +0.4 4,127,142 + +0.1 4,127,143 - +0.8 4,127,422 - -0.5
Or see this region's nucleotide sequence