Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3649

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
4,088,070	-		Rv3647c	0.79	+1.2
4,088,154	-				-0.4
4,088,154	-				-0.6
4,088,227	-				-0.8
4,088,270	+				+0.8
4,088,270	+				-0.1
4,088,271	-				-0.6
4,088,271	-				+0.2
4,088,766	-				-0.1
4,088,766	-				+0.1
4,088,991	+				+0.2
4,089,202	-		Rv3649	0.18	-1.1
4,089,286	+		Rv3649	0.22	-2.3
4,089,413	-		Rv3649	0.27	+0.0
4,089,789	+		Rv3649	0.44	-0.9
4,089,897	-		Rv3649	0.48	-1.5
4,090,035	+		Rv3649	0.54	+0.0
4,090,036	-		Rv3649	0.54	-0.1
4,090,243	-		Rv3649	0.63	-0.3
4,091,189	-				-0.1
4,091,417	-		Rv3650	0.65	-0.8
4,091,571	+				-0.7
4,091,572	-				+1.8
4,091,605	+				-0.2
4,091,606	-				-0.2
4,092,061	+		Rv3651	0.21	-1.2
4,092,061	+		Rv3651	0.21	-0.4