Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3526

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
3,961,454	+		Rv3524	0.68	-0.4
3,961,455	-		Rv3524	0.68	-0.4
3,961,606	+		Rv3524	0.82	-0.1
3,961,607	-		Rv3524	0.83	-0.2
3,961,614	-		Rv3524	0.83	+0.0
3,961,614	-		Rv3524	0.83	-0.1
3,961,614	-		Rv3524	0.83	-0.1
3,961,767	+				-1.2
3,961,801	+				-0.2
3,961,801	+				+2.6
3,961,801	+				-1.8
3,961,802	-				+0.2
3,961,865	+		Rv3525c	0.12	-0.1
3,962,001	+		Rv3525c	0.38	-0.6
3,962,133	+		Rv3525c	0.63	+0.6
3,962,134	-		Rv3525c	0.64	-0.5
3,962,134	-		Rv3525c	0.64	+0.4
3,962,136	+		Rv3525c	0.64	-0.5
3,962,136	+		Rv3525c	0.64	-0.6
3,962,185	+		Rv3525c	0.73	+1.6
3,962,329	+				+1.8
3,962,330	-				-1.3
3,962,330	-				+0.0
3,962,334	-				+0.2
3,962,335	+				+0.3
3,962,335	+				+1.1
3,962,336	-				-0.4
3,962,336	-				-0.3
3,962,346	+				-0.1
3,962,347	-				-0.4
3,962,350	+				-0.1
3,962,351	-				+1.8
3,962,502	+				-0.2
3,962,502	+				+1.4
3,962,502	+				+1.4
3,962,503	-				+0.0
3,962,541	+				-0.1
3,962,541	+				+0.4
3,962,542	-				-0.0
3,962,748	+		Rv3526	0.27	+0.1
3,962,749	-		Rv3526	0.27	-0.3
3,962,749	-		Rv3526	0.27	+0.2
3,962,749	-		Rv3526	0.27	+0.1
3,962,749	-		Rv3526	0.27	+0.1
3,962,973	-		Rv3526	0.46	-0.3
3,962,973	-		Rv3526	0.46	+1.4
3,962,973	-		Rv3526	0.46	-0.3
3,962,988	+		Rv3526	0.47	-0.0
3,963,012	+		Rv3526	0.49	+0.0
3,963,051	+		Rv3526	0.53	+1.0
3,963,099	+		Rv3526	0.57	+1.0
3,963,099	+		Rv3526	0.57	+1.1
3,963,184	-		Rv3526	0.64	-0.4
3,963,279	-		Rv3526	0.72	-0.6
3,963,418	-		Rv3526	0.84	+1.8
3,963,435	+		Rv3526	0.86	-0.2
3,963,807	-		Rv3527	0.45	+0.4
3,964,026	-				-0.3
3,964,152	-				+0.2
3,964,152	-				+0.6
3,964,152	-				+0.5
3,964,152	-				-0.8
3,964,152	-				+0.7
3,964,276	-				+1.8