Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3505

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
3,922,855	+		Rv3504	0.32	-0.6
3,922,924	+		Rv3504	0.38	+0.3
3,922,924	+		Rv3504	0.38	-1.1
3,922,924	+		Rv3504	0.38	-1.4
3,922,924	+		Rv3504	0.38	-0.8
3,922,924	+		Rv3504	0.38	-0.4
3,922,925	-		Rv3504	0.38	+0.4
3,922,976	-		Rv3504	0.42	-0.2
3,922,991	+		Rv3504	0.43	-2.9
3,923,036	+		Rv3504	0.47	-0.4
3,923,036	+		Rv3504	0.47	-1.6
3,923,045	+		Rv3504	0.48	-1.4
3,923,122	+		Rv3504	0.54	-0.8
3,923,123	-		Rv3504	0.54	+1.0
3,923,125	+		Rv3504	0.54	+0.7
3,923,125	+		Rv3504	0.54	+0.3
3,923,125	+		Rv3504	0.54	-0.2
3,923,125	+		Rv3504	0.54	+0.4
3,923,126	-		Rv3504	0.54	-0.1
3,923,126	-		Rv3504	0.54	-0.6
3,923,345	+		Rv3504	0.73	-0.0
3,923,483	-		Rv3504	0.84	-0.6
3,923,956	+		Rv3505	0.23	+0.1
3,923,957	-		Rv3505	0.23	+1.7
3,924,666	+		Rv3505	0.86	+0.7
3,924,667	-		Rv3505	0.86	-0.4
3,924,716	+				+0.1
3,924,817	+				+0.3
3,924,828	-				-2.0
3,925,187	-		Rv3506	0.20	+0.6
3,925,470	-		Rv3506	0.38	+0.6
3,925,470	-		Rv3506	0.38	+0.1
3,925,470	-		Rv3506	0.38	+0.2
3,925,470	-		Rv3506	0.38	-0.9
3,925,610	+		Rv3506	0.48	-0.3
3,925,610	+		Rv3506	0.48	+0.2
3,925,619	+		Rv3506	0.48	-0.3
3,925,620	-		Rv3506	0.48	-0.9
3,925,640	+		Rv3506	0.50	+0.1