Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3424c

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
3,841,429	-				-0.8
3,841,572	-				-2.4
3,841,835	+		Rv3424c	0.33	+0.4
3,841,836	-		Rv3424c	0.34	-0.2
3,842,409	+		Rv3425	0.32	+0.7
3,842,409	+		Rv3425	0.32	-0.2
3,842,410	-		Rv3425	0.32	-0.7
3,842,447	-		Rv3425	0.39	-0.6
3,842,464	-		Rv3425	0.42	-0.1
3,842,482	-		Rv3425	0.46	+0.2
3,842,521	+		Rv3425	0.53	+1.1
3,842,546	+		Rv3425	0.58	-0.8
3,842,546	+		Rv3425	0.58	-2.1
3,842,615	+		Rv3425	0.71	-1.1
3,842,616	-		Rv3425	0.71	+0.4
3,842,650	+		Rv3425	0.77	-0.7
3,842,660	-		Rv3425	0.79	+0.9
3,842,681	+		Rv3425	0.83	+0.1
3,842,696	+		Rv3425	0.86	-0.6
3,842,696	+		Rv3425	0.86	-0.1
3,842,696	+		Rv3425	0.86	-0.2
3,842,696	+		Rv3425	0.86	+0.1
3,842,696	+		Rv3425	0.86	-0.6
3,842,696	+		Rv3425	0.86	-1.7
3,842,697	-		Rv3425	0.86	-1.1
3,842,697	-		Rv3425	0.86	-0.9
3,842,697	-		Rv3425	0.86	-0.1
3,842,697	-		Rv3425	0.86	-0.3
3,842,697	-		Rv3425	0.86	-1.2
3,842,756	-				-0.9
3,842,894	+				-0.1
3,842,894	+				-1.6