Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3393

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
3,807,644	+				+0.4
3,807,652	-				+0.6
3,808,328	+		Rv3392c	0.87	+0.6
3,808,341	-		Rv3392c	0.89	+0.8
3,808,449	-				-0.6
3,808,471	+				-0.6
3,808,518	+				-0.4
3,808,717	+		Rv3393	0.28	+0.1
3,809,134	-		Rv3393	0.73	+0.3
3,809,167	-		Rv3393	0.76	-0.7
3,809,175	+		Rv3393	0.77	+0.9
3,809,176	-		Rv3393	0.77	-0.2
3,809,177	+		Rv3393	0.77	+1.0
3,809,178	-		Rv3393	0.77	-0.3
3,809,465	-				-0.1
3,809,805	+		Rv3394c	0.23	-1.3