Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3347c

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
3,742,924	+				+1.4
3,742,924	+				+0.2
3,742,924	+				-0.1
3,742,924	+				-0.0
3,742,925	-				+1.8
3,742,965	+				-0.2
3,743,001	+				+0.4
3,743,043	+				-0.0
3,743,044	-				+1.8
3,743,061	+				+0.3
3,743,061	+				+0.9
3,743,119	+				+0.2
3,743,119	+				+0.8
3,743,120	-				+1.8
3,743,120	-				+0.0
3,743,190	-				-0.0
3,743,190	-				-0.6
3,743,234	-		Rv3346c	0.14	+1.8
3,743,234	-		Rv3346c	0.14	-0.0
3,743,234	-		Rv3346c	0.14	+0.1
3,743,525	+				+1.3
3,743,525	+				+0.7
3,743,526	-				+0.8
3,743,526	-				+0.9
3,743,526	-				+0.6
3,743,602	+				+0.1
3,743,602	+				+1.4
3,743,602	+				+0.1
3,743,603	-				+0.3
3,743,603	-				-0.3
3,743,603	-				+1.1
3,743,603	-				-1.0
3,743,603	-				+1.4
3,743,603	-				+0.1
3,743,610	-				+0.6
3,743,764	+				+0.3
3,743,764	+				-0.3
3,743,764	+				-0.0
3,743,764	+				+0.4
3,743,765	-				-0.9
3,743,765	-				+0.3
3,744,083	+				-0.0
3,744,083	+				+0.8
3,744,083	+				+0.1
3,744,084	-				+0.2
3,744,084	-				-0.5
3,744,084	-				+1.4
3,744,320	+				+0.1
3,744,320	+				+1.0
3,744,321	-				+1.8
3,744,321	-				-0.2
3,744,446	+				-0.9
3,744,447	-				-0.5
3,744,484	+				+4.6
3,744,484	+				+1.2
3,744,484	+				+4.1
3,744,682	-		Rv3347c	0.10	-0.7
3,744,712	-		Rv3347c	0.11	+2.0
3,744,712	-		Rv3347c	0.11	+0.2
3,744,712	-		Rv3347c	0.11	+0.4
3,744,712	-		Rv3347c	0.11	-0.1
3,744,712	-		Rv3347c	0.11	-0.3
3,744,725	+		Rv3347c	0.11	+0.2
3,744,725	+		Rv3347c	0.11	+0.2
3,744,725	+		Rv3347c	0.11	+1.0
3,744,725	+		Rv3347c	0.11	-0.4
3,744,739	+		Rv3347c	0.11	-0.8
3,744,891	+		Rv3347c	0.12	-0.4
3,744,891	+		Rv3347c	0.12	-1.3
3,744,891	+		Rv3347c	0.12	+0.5
3,744,891	+		Rv3347c	0.12	-0.1
3,744,892	-		Rv3347c	0.12	+1.8
3,744,981	+		Rv3347c	0.13	+0.6
3,744,982	-		Rv3347c	0.13	+0.6
3,744,982	-		Rv3347c	0.13	+0.2
3,744,982	-		Rv3347c	0.13	-0.3
3,744,982	-		Rv3347c	0.13	-0.1
3,745,289	-		Rv3347c	0.17	-0.3
3,745,575	+		Rv3347c	0.20	-0.7
3,745,640	-		Rv3347c	0.20	-1.2
3,745,640	-		Rv3347c	0.20	+0.2
3,745,830	+		Rv3347c	0.22	+0.0
3,745,830	+		Rv3347c	0.22	+1.3
3,745,831	-		Rv3347c	0.22	-1.4
3,745,831	-		Rv3347c	0.22	-0.1
3,746,014	+		Rv3347c	0.24	-0.8
3,746,015	-		Rv3347c	0.24	-0.2
3,746,107	+		Rv3347c	0.25	+0.8
3,746,107	+		Rv3347c	0.25	+0.2
3,746,108	-		Rv3347c	0.25	-1.1
3,746,108	-		Rv3347c	0.25	-1.4
3,746,139	+		Rv3347c	0.26	-0.5
3,746,139	+		Rv3347c	0.26	-1.1
3,746,140	-		Rv3347c	0.26	+0.8
3,746,140	-		Rv3347c	0.26	-0.1
3,746,140	-		Rv3347c	0.26	+0.2
3,746,344	+		Rv3347c	0.28	-0.8
3,746,496	+		Rv3347c	0.29	+1.2
3,746,502	+		Rv3347c	0.29	-0.7
3,746,503	-		Rv3347c	0.29	-0.8
3,746,503	-		Rv3347c	0.29	+0.1
3,746,503	-		Rv3347c	0.29	+0.1
3,746,503	-		Rv3347c	0.29	-0.6
3,746,510	+		Rv3347c	0.30	+0.0
3,746,511	-		Rv3347c	0.30	+1.8
3,746,511	-		Rv3347c	0.30	-0.0
3,746,520	+		Rv3347c	0.30	-0.1
3,746,520	+		Rv3347c	0.30	+0.8
3,746,521	-		Rv3347c	0.30	-0.1
3,746,521	-		Rv3347c	0.30	+0.1
3,746,521	-		Rv3347c	0.30	+4.6
3,746,521	-		Rv3347c	0.30	+0.8
3,746,700	+		Rv3347c	0.32	-0.1
3,746,725	+		Rv3347c	0.32	+1.8
3,746,756	-		Rv3347c	0.32	+0.2
3,746,756	-		Rv3347c	0.32	+0.3
3,746,771	-		Rv3347c	0.32	+0.0
3,747,095	-		Rv3347c	0.36	-0.4
3,747,124	+		Rv3347c	0.36	-0.2
3,747,137	+		Rv3347c	0.36	-0.6
3,747,137	+		Rv3347c	0.36	-0.8
3,747,137	+		Rv3347c	0.36	-0.0
3,747,138	-		Rv3347c	0.36	+0.2
3,747,204	+		Rv3347c	0.37	+0.9
3,747,204	+		Rv3347c	0.37	+1.0
3,747,204	+		Rv3347c	0.37	+2.2
3,747,204	+		Rv3347c	0.37	-0.7
3,747,204	+		Rv3347c	0.37	+1.8
3,747,205	-		Rv3347c	0.37	+0.1
3,747,205	-		Rv3347c	0.37	+0.6
3,747,205	-		Rv3347c	0.37	+1.2
3,747,205	-		Rv3347c	0.37	-0.8
3,747,205	-		Rv3347c	0.37	+0.1
3,747,340	+		Rv3347c	0.38	-0.1
3,747,341	-		Rv3347c	0.38	-0.3
3,747,351	+		Rv3347c	0.38	-0.6
3,747,352	-		Rv3347c	0.38	+0.2
3,747,352	-		Rv3347c	0.38	-0.1
3,747,352	-		Rv3347c	0.38	+0.2
3,747,663	-		Rv3347c	0.42	-0.3
3,747,834	-		Rv3347c	0.44	+0.5
3,748,035	+		Rv3347c	0.46	+0.3
3,748,036	-		Rv3347c	0.46	-0.8
3,748,195	+		Rv3347c	0.47	-0.2
3,748,196	-		Rv3347c	0.47	+0.5
3,748,278	+		Rv3347c	0.48	-0.3
3,748,279	-		Rv3347c	0.48	-0.7
3,748,279	-		Rv3347c	0.48	-0.9
3,748,482	+		Rv3347c	0.50	-0.6
3,748,482	+		Rv3347c	0.50	+0.4
3,748,483	-		Rv3347c	0.50	+0.9
3,748,483	-		Rv3347c	0.50	+1.8
3,748,483	-		Rv3347c	0.50	-0.6
3,748,483	-		Rv3347c	0.50	-0.2
3,748,486	+		Rv3347c	0.50	-0.4
3,748,573	-		Rv3347c	0.51	+0.4
3,748,573	-		Rv3347c	0.51	+1.4
3,748,573	-		Rv3347c	0.51	-1.1
3,749,016	+		Rv3347c	0.56	+0.8
3,749,016	+		Rv3347c	0.56	-0.5
3,749,017	-		Rv3347c	0.56	-1.2
3,749,017	-		Rv3347c	0.56	-0.1
3,749,605	+		Rv3347c	0.62	+3.3
3,749,606	-		Rv3347c	0.62	-0.2
3,749,734	+		Rv3347c	0.64	+0.0
3,749,734	+		Rv3347c	0.64	-0.5
3,749,735	-		Rv3347c	0.64	+2.5
3,749,754	-		Rv3347c	0.64	-0.7
3,750,000	+		Rv3347c	0.66	-0.8
3,750,001	-		Rv3347c	0.66	-0.0
3,750,001	-		Rv3347c	0.66	-1.6
3,750,061	+		Rv3347c	0.67	+1.8
3,750,061	+		Rv3347c	0.67	+0.4
3,750,061	+		Rv3347c	0.67	+1.5
3,750,327	+		Rv3347c	0.70	-0.1
3,750,327	+		Rv3347c	0.70	+0.6
3,750,327	+		Rv3347c	0.70	-1.9
3,750,586	+		Rv3347c	0.73	-0.6
3,750,725	-		Rv3347c	0.74	-0.1
3,750,833	+		Rv3347c	0.75	-0.2
3,750,833	+		Rv3347c	0.75	+0.1
3,750,981	+		Rv3347c	0.77	+0.8
3,751,205	-		Rv3347c	0.79	-0.5
3,751,205	-		Rv3347c	0.79	-0.8
3,751,207	+		Rv3347c	0.79	-0.7
3,751,226	-		Rv3347c	0.79	+1.9
3,751,313	+		Rv3347c	0.80	+0.4
3,751,313	+		Rv3347c	0.80	+0.6
3,751,314	-		Rv3347c	0.80	-0.8
3,751,314	-		Rv3347c	0.80	+0.3
3,751,314	-		Rv3347c	0.80	-0.5
3,751,449	-		Rv3347c	0.82	-0.5
3,751,516	+		Rv3347c	0.82	-1.2
3,751,675	+		Rv3347c	0.84	-0.4
3,751,675	+		Rv3347c	0.84	+1.9
3,751,675	+		Rv3347c	0.84	-2.3
3,751,676	-		Rv3347c	0.84	-0.4
3,751,679	+		Rv3347c	0.84	+1.6
3,751,679	+		Rv3347c	0.84	+0.3
3,751,679	+		Rv3347c	0.84	-0.4
3,751,680	-		Rv3347c	0.84	+0.3
3,751,680	-		Rv3347c	0.84	-0.2
3,751,680	-		Rv3347c	0.84	-1.0
3,751,680	-		Rv3347c	0.84	+0.9
3,751,884	+		Rv3347c	0.86	+0.3
3,751,884	+		Rv3347c	0.86	-0.7
3,751,884	+		Rv3347c	0.86	-0.6
3,751,885	-		Rv3347c	0.86	-0.4
3,751,885	-		Rv3347c	0.86	-0.9
3,751,885	-		Rv3347c	0.86	-0.3
3,752,062	+		Rv3347c	0.88	-0.1
3,752,064	+		Rv3347c	0.88	-0.4
3,752,064	+		Rv3347c	0.88	+0.6
3,752,064	+		Rv3347c	0.88	+1.2
3,752,064	+		Rv3347c	0.88	-1.0
3,752,064	+		Rv3347c	0.88	+1.2
3,752,064	+		Rv3347c	0.88	+1.2
3,752,065	-		Rv3347c	0.88	+0.2
3,752,065	-		Rv3347c	0.88	-0.3
3,752,068	+		Rv3347c	0.88	+0.4
3,752,069	-		Rv3347c	0.88	-0.2
3,752,572	+				-0.5
3,752,766	+				-0.5
3,752,971	-				+1.8
3,752,971	-				-1.2
3,753,138	+				-0.3
3,753,138	+				+1.6
3,753,138	+				+3.8
3,753,268	-				+2.0
3,753,268	-				+0.2
3,753,318	+				-0.8
3,753,319	-				+0.2
3,753,338	-				-0.1
3,753,338	-				-2.1
3,753,338	-				-1.4