Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3175

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
3,541,866	-		Rv3173c	0.70	-0.1
3,541,983	-		Rv3173c	0.90	-0.6
3,541,983	-		Rv3173c	0.90	-0.8
3,542,045	+				-0.4
3,542,069	+				+1.5
3,542,091	-				-0.1
3,542,202	-				+0.4
3,542,561	+		Rv3174	0.60	-0.4
3,542,649	-		Rv3174	0.72	+0.2
3,542,839	+				+0.4
3,542,990	-				-0.2
3,543,127	+		Rv3175	0.18	+0.1
3,543,127	+		Rv3175	0.18	+0.3
3,543,127	+		Rv3175	0.18	+0.2
3,543,127	+		Rv3175	0.18	+1.3
3,543,178	+		Rv3175	0.21	+0.0
3,543,178	+		Rv3175	0.21	-0.5
3,543,178	+		Rv3175	0.21	+0.9
3,543,179	-		Rv3175	0.21	+0.0
3,543,182	+		Rv3175	0.22	-0.1
3,543,183	-		Rv3175	0.22	+0.0
3,543,183	-		Rv3175	0.22	-0.0
3,543,395	-		Rv3175	0.36	-1.0
3,543,635	-		Rv3175	0.52	-0.8
3,543,963	-		Rv3175	0.74	-0.3
3,544,151	-		Rv3175	0.87	+1.8
3,544,230	+				-1.0
3,544,289	+				-0.6
3,544,289	+				+1.3
3,544,290	-				-0.2
3,544,346	-				+0.1
3,544,346	-				-0.5
3,544,371	-				-0.7
3,544,927	+		Rv3176c	0.61	+0.8
3,545,017	+		Rv3176c	0.70	-0.8
3,545,054	-		Rv3176c	0.74	+1.8
3,545,063	-		Rv3176c	0.75	+0.3
3,545,119	+		Rv3176c	0.81	+0.5
3,545,119	+		Rv3176c	0.81	+0.6
3,545,181	+		Rv3176c	0.87	-1.2
3,545,181	+		Rv3176c	0.87	-0.2
3,545,181	+		Rv3176c	0.87	+0.1