Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3135

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
3,500,625	+		Rv3134c	0.85	-1.1
3,500,626	-		Rv3134c	0.85	-0.5
3,500,710	+				+0.2
3,500,774	+				-0.3
3,500,775	-				-0.3
3,500,801	-				-1.2
3,500,853	+				-1.9
3,500,909	+				-0.0
3,500,981	-				+2.0
3,501,196	-				-0.2
3,501,375	+		Rv3135	0.10	-0.8
3,501,380	-		Rv3135	0.12	-0.6
3,501,380	-		Rv3135	0.12	+0.8
3,501,380	-		Rv3135	0.12	-0.8
3,501,547	+		Rv3135	0.53	-1.8
3,501,547	+		Rv3135	0.53	+0.2
3,501,548	-		Rv3135	0.54	-0.2
3,501,927	-		Rv3136	0.12	-0.9
3,501,927	-		Rv3136	0.12	-1.4
3,502,008	-		Rv3136	0.19	-0.1
3,502,010	-		Rv3136	0.19	-1.7
3,502,022	+		Rv3136	0.20	-0.5
3,502,094	+		Rv3136	0.26	-1.1
3,502,095	-		Rv3136	0.26	+1.3
3,502,212	-		Rv3136	0.37	-0.9
3,502,247	+		Rv3136	0.40	+1.8
3,502,247	+		Rv3136	0.40	+0.5
3,502,248	-		Rv3136	0.40	+0.8
3,502,254	-		Rv3136	0.40	-0.3
3,502,542	+		Rv3136	0.65	+0.6
3,502,542	+		Rv3136	0.65	+0.4