Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3055

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
3,415,180	-				-1.4
3,415,180	-				-0.5
3,415,186	-				-0.0
3,415,223	-				+0.9
3,415,223	-				+0.2
3,415,223	-				-0.1
3,415,223	-				+0.9
3,415,223	-				-1.3
3,415,264	-				+1.8
3,415,264	-				+0.4
3,415,319	-				-1.4
3,415,335	-				-0.2
3,415,335	-				+0.6
3,415,336	+				-0.1
3,415,336	+				+0.1
3,415,337	-				-0.4
3,415,364	+				-0.2
3,415,407	+				-0.6
3,415,606	+		Rv3054c	0.31	-0.7
3,415,606	+		Rv3054c	0.31	-1.5
3,415,607	-		Rv3054c	0.31	+0.1
3,415,980	+				+0.4
3,415,980	+				+0.1
3,415,993	+				-1.0
3,415,993	+				-0.2
3,415,993	+				+0.1
3,415,993	+				-0.1
3,415,994	-				-0.4
3,415,994	-				+1.8
3,415,994	-				+2.4
3,415,994	-				-0.4
3,415,994	-				-0.3
3,415,994	-				+0.0
3,415,994	-				+0.3
3,416,070	-				-0.8
3,416,526	+		Rv3055	0.72	+0.2
3,416,603	+		Rv3055	0.85	+0.1
3,416,603	+		Rv3055	0.85	+0.6
3,416,604	-		Rv3055	0.85	+0.6
3,416,604	-		Rv3055	0.85	+0.4
3,416,704	+				-0.3
3,416,864	+		Rv3056	0.15	+0.2
3,416,864	+		Rv3056	0.15	-0.3
3,416,865	-		Rv3056	0.15	-0.1
3,416,963	+		Rv3056	0.25	+0.3
3,417,044	+		Rv3056	0.33	+0.5
3,417,044	+		Rv3056	0.33	+1.1
3,417,044	+		Rv3056	0.33	-0.5
3,417,045	-		Rv3056	0.33	-0.0
3,417,045	-		Rv3056	0.33	-1.7
3,417,045	-		Rv3056	0.33	+0.3
3,417,141	+		Rv3056	0.42	+0.9
3,417,141	+		Rv3056	0.42	+0.9
3,417,145	+		Rv3056	0.42	+0.2
3,417,145	+		Rv3056	0.42	-0.7
3,417,145	+		Rv3056	0.42	+0.8
3,417,146	-		Rv3056	0.42	-0.9
3,417,146	-		Rv3056	0.42	-0.7
3,417,146	-		Rv3056	0.42	+0.4
3,417,146	-		Rv3056	0.42	-0.2
3,417,146	-		Rv3056	0.42	+0.2
3,417,146	-		Rv3056	0.42	-1.2
3,417,206	+		Rv3056	0.48	-0.4
3,417,206	+		Rv3056	0.48	+0.1
3,417,206	+		Rv3056	0.48	-0.2
3,417,207	-		Rv3056	0.48	-0.0
3,417,250	+		Rv3056	0.52	+2.8
3,417,323	+		Rv3056	0.59	-0.2
3,417,324	-		Rv3056	0.59	-0.5
3,417,605	+		Rv3056	0.86	+0.4
3,417,605	+		Rv3056	0.86	+0.2
3,417,605	+		Rv3056	0.86	+0.4
3,417,690	+				-0.7
3,417,690	+				-0.1
3,417,691	-				+0.3
3,417,691	-				+0.8