Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2931

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
3,244,648	+		Rv2930	0.54	+0.3
3,244,648	+		Rv2930	0.54	+0.3
3,244,648	+		Rv2930	0.54	+0.1
3,244,703	+		Rv2930	0.57	-0.2
3,244,703	+		Rv2930	0.57	+0.1
3,244,703	+		Rv2930	0.57	+0.0
3,244,703	+		Rv2930	0.57	+4.1
3,244,703	+		Rv2930	0.57	+0.1
3,244,704	-		Rv2930	0.57	-0.2
3,244,704	-		Rv2930	0.57	+0.7
3,244,704	-		Rv2930	0.57	+0.3
3,244,704	-		Rv2930	0.57	+0.4
3,244,704	-		Rv2930	0.57	+0.6
3,244,704	-		Rv2930	0.57	-0.5
3,244,704	-		Rv2930	0.57	+2.3
3,244,704	-		Rv2930	0.57	+0.6
3,244,704	-		Rv2930	0.57	+1.3
3,244,704	-		Rv2930	0.57	+0.1
3,244,705	+		Rv2930	0.58	-0.9
3,244,705	+		Rv2930	0.58	+1.0
3,244,705	+		Rv2930	0.58	-0.2
3,244,705	+		Rv2930	0.58	+0.3
3,244,705	+		Rv2930	0.58	+0.3
3,244,706	-		Rv2930	0.58	+0.7
3,244,706	-		Rv2930	0.58	+0.8
3,244,706	-		Rv2930	0.58	+0.4
3,244,706	-		Rv2930	0.58	+0.4
3,244,706	-		Rv2930	0.58	+0.5
3,244,706	-		Rv2930	0.58	+0.1
3,244,706	-		Rv2930	0.58	+0.4
3,244,706	-		Rv2930	0.58	+0.2
3,244,706	-		Rv2930	0.58	-0.0
3,244,706	-		Rv2930	0.58	+0.2
3,244,756	+		Rv2930	0.60	+0.3
3,244,757	-		Rv2930	0.61	+0.5
3,244,935	+		Rv2930	0.71	+0.9
3,244,942	+		Rv2930	0.71	-0.2
3,245,242	-		Rv2930	0.88	+0.1
3,245,438	+				+2.6
3,245,439	-				+0.2
3,245,439	-				+2.2
3,245,444	+				+0.1
3,245,496	+				+0.1
3,245,500	+				+0.0
3,245,500	+				+0.4
3,245,500	+				+0.3
3,245,500	+				+0.2
3,245,500	+				+0.3
3,245,500	+				+1.7
3,245,501	-				+0.9
3,245,501	-				+0.2
3,245,501	-				+1.5
3,245,501	-				+0.2
3,245,503	+				-0.2
3,245,504	-				+1.0
3,245,504	-				+0.1
3,245,511	-				+1.7
3,245,587	+				-1.3
3,245,587	+				+0.0
3,245,588	-				-0.4
3,245,588	-				-2.0
3,245,588	-				+0.0
3,245,676	+				+0.0
3,245,677	-				+0.1
3,245,921	+				+1.2
3,245,922	-				+0.5
3,246,127	-		Rv2931	0.12	+0.3
3,246,127	-		Rv2931	0.12	-0.1
3,246,176	+		Rv2931	0.13	+0.7
3,246,216	+		Rv2931	0.14	+0.3
3,246,251	-		Rv2931	0.14	+1.6
3,246,470	-		Rv2931	0.18	+0.5
3,246,655	-		Rv2931	0.21	+0.5
3,247,082	-		Rv2931	0.29	+0.0
3,247,098	-		Rv2931	0.29	+0.6
3,247,347	+		Rv2931	0.34	+1.0
3,247,558	+		Rv2931	0.38	+0.8
3,247,558	+		Rv2931	0.38	+0.7
3,247,570	-		Rv2931	0.38	+1.0
3,247,792	-		Rv2931	0.42	+0.4
3,248,004	+		Rv2931	0.45	+0.0
3,248,004	+		Rv2931	0.45	-0.6
3,248,004	+		Rv2931	0.45	+0.1
3,248,208	+		Rv2931	0.49	+1.7
3,248,602	-		Rv2931	0.56	+0.4
3,248,659	+		Rv2931	0.57	-0.6
3,248,747	+		Rv2931	0.59	-0.6
3,248,747	+		Rv2931	0.59	+0.6
3,249,052	-		Rv2931	0.64	+0.3
3,249,077	-		Rv2931	0.65	+0.2
3,249,107	+		Rv2931	0.65	-0.1
3,249,107	+		Rv2931	0.65	+0.2
3,249,107	+		Rv2931	0.65	+0.4
3,249,108	-		Rv2931	0.65	+0.0
3,249,248	+		Rv2931	0.68	-0.1
3,249,249	-		Rv2931	0.68	+0.7
3,249,249	-		Rv2931	0.68	+0.4
3,249,288	+		Rv2931	0.68	+2.3
3,249,289	-		Rv2931	0.68	+0.3
3,249,289	-		Rv2931	0.68	+0.5
3,249,373	+		Rv2931	0.70	+0.8
3,249,373	+		Rv2931	0.70	+0.1
3,249,373	+		Rv2931	0.70	+0.8
3,249,448	-		Rv2931	0.71	+0.4
3,249,489	+		Rv2931	0.72	+0.1
3,249,490	-		Rv2931	0.72	+0.4
3,249,498	+		Rv2931	0.72	+0.5
3,249,498	+		Rv2931	0.72	+2.2
3,249,499	-		Rv2931	0.72	+0.3
3,249,612	-		Rv2931	0.74	-1.4
3,249,922	-		Rv2931	0.80	+1.7
3,250,280	+		Rv2931	0.86	+0.6
3,250,280	+		Rv2931	0.86	-0.2
3,250,280	+		Rv2931	0.86	+3.2
3,250,280	+		Rv2931	0.86	+0.7
3,250,281	-		Rv2931	0.86	+0.6
3,250,312	+		Rv2931	0.86	+0.7
3,250,313	-		Rv2931	0.86	+0.7
3,250,351	-		Rv2931	0.87	+0.1
3,250,402	-		Rv2931	0.88	+0.8
3,250,402	-		Rv2931	0.88	+0.6
3,250,419	+		Rv2931	0.88	+0.9
3,250,420	-		Rv2931	0.88	-0.0
3,250,537	+				+1.0
3,250,537	+				+0.1
3,250,678	-				+0.0
3,250,678	-				+0.7
3,250,678	-				+0.4
3,250,681	+				-0.6
3,250,681	+				+0.5
3,250,681	+				-1.0
3,251,309	+				+0.0
3,251,488	-				+0.4
3,251,537	+		Rv2932	0.10	+0.2
3,251,549	+		Rv2932	0.10	-0.1
3,251,584	-		Rv2932	0.11	+0.1
3,251,584	-		Rv2932	0.11	+0.6
3,251,640	-		Rv2932	0.12	-0.0
3,251,801	-		Rv2932	0.16	+0.7
3,251,995	-		Rv2932	0.20	+0.3