Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2608

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
2,934,055	+				+1.8
2,934,092	+				-0.6
2,934,093	-				+0.1
2,934,093	-				+1.3
2,934,097	+				-0.6
2,934,097	+				-0.1
2,934,163	-				-0.8
2,934,478	-		Rv2607	0.41	+0.4
2,934,478	-		Rv2607	0.41	+0.0
2,934,478	-		Rv2607	0.41	-0.6
2,934,516	+		Rv2607	0.47	-0.2
2,934,517	-		Rv2607	0.47	+3.3
2,934,517	-		Rv2607	0.47	+1.0
2,934,540	+		Rv2607	0.51	-0.7
2,934,547	+		Rv2607	0.52	-0.5
2,934,547	+		Rv2607	0.52	-2.4
2,934,565	+		Rv2607	0.54	-0.6
2,934,565	+		Rv2607	0.54	+0.5
2,934,565	+		Rv2607	0.54	-0.7
2,934,565	+		Rv2607	0.54	+2.7
2,934,565	+		Rv2607	0.54	+0.6
2,934,566	-		Rv2607	0.55	-0.2
2,934,566	-		Rv2607	0.55	-0.9
2,934,601	+		Rv2607	0.60	-0.7
2,934,601	+		Rv2607	0.60	+0.0
2,934,602	-		Rv2607	0.60	-0.0
2,934,602	-		Rv2607	0.60	-0.9
2,934,609	+		Rv2607	0.61	+0.0
2,934,609	+		Rv2607	0.61	-0.9
2,934,610	-		Rv2607	0.61	+0.2
2,934,939	+				-0.0
2,934,939	+				-0.2
2,934,992	+				-0.9
2,935,037	+				-2.4
2,935,037	+				-0.3
2,935,037	+				+0.6
2,935,038	-				+0.0
2,935,038	-				+0.1
2,935,089	+				-1.7
2,935,259	+		Rv2608	0.12	-0.2
2,935,259	+		Rv2608	0.12	+0.5
2,935,259	+		Rv2608	0.12	+2.1
2,935,260	-		Rv2608	0.12	+0.7
2,935,463	+		Rv2608	0.24	+0.7
2,935,473	+		Rv2608	0.24	-0.2
2,935,474	-		Rv2608	0.25	+0.8
2,935,474	-		Rv2608	0.25	+0.3
2,935,474	-		Rv2608	0.25	+0.1
2,935,505	+		Rv2608	0.26	+0.0
2,935,505	+		Rv2608	0.26	-1.1
2,935,546	+		Rv2608	0.29	-0.3
2,935,757	-		Rv2608	0.41	-1.0
2,935,881	+		Rv2608	0.48	+0.7
2,935,881	+		Rv2608	0.48	+0.4
2,935,882	-		Rv2608	0.48	-0.2
2,935,882	-		Rv2608	0.48	-0.0
2,935,906	-		Rv2608	0.49	-1.7
2,935,913	+		Rv2608	0.50	-2.3
2,935,913	+		Rv2608	0.50	-0.6
2,935,949	+		Rv2608	0.52	-2.2
2,935,957	+		Rv2608	0.52	-0.8
2,936,006	-		Rv2608	0.55	-0.3
2,936,015	+		Rv2608	0.56	-0.5
2,936,015	+		Rv2608	0.56	-0.4
2,936,015	+		Rv2608	0.56	-0.6
2,936,015	+		Rv2608	0.56	-1.8
2,936,016	-		Rv2608	0.56	-1.2
2,936,016	-		Rv2608	0.56	-0.4
2,936,041	-		Rv2608	0.57	-0.1
2,936,124	+		Rv2608	0.62	-1.6
2,936,198	-		Rv2608	0.66	-0.7
2,936,240	-		Rv2608	0.69	-0.9
2,936,306	+		Rv2608	0.72	-0.7
2,936,333	+		Rv2608	0.74	-0.4
2,936,333	+		Rv2608	0.74	-0.2
2,936,360	+		Rv2608	0.75	-0.8
2,936,495	+		Rv2608	0.83	-2.1
2,936,495	+		Rv2608	0.83	-0.6
2,936,495	+		Rv2608	0.83	+1.0
2,936,495	+		Rv2608	0.83	-0.4
2,936,496	-		Rv2608	0.83	+0.1
2,936,496	-		Rv2608	0.83	-0.3
2,936,615	+				-0.1
2,936,773	-				+0.0
2,936,903	+				-0.1
2,936,986	-		Rv2609c	0.17	-1.5
2,937,051	+		Rv2609c	0.23	+0.1
2,937,051	+		Rv2609c	0.23	-0.2
2,937,051	+		Rv2609c	0.23	-0.9
2,937,051	+		Rv2609c	0.23	-1.0
2,937,052	-		Rv2609c	0.23	+0.7