Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1814

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
2,055,558	+				+0.1
2,055,559	-				-1.7
2,055,593	-				-1.2
2,055,623	-				+2.7
2,055,641	-				+0.0
2,055,641	-				-0.3
2,055,641	-				-2.0
2,055,683	-				-0.8
2,055,776	-		Rv1813c	0.22	+2.1
2,055,790	+		Rv1813c	0.25	-0.4
2,055,960	-		Rv1813c	0.65	+0.2
2,055,960	-		Rv1813c	0.65	+0.5
2,056,066	-		Rv1813c	0.89	-0.0
2,056,066	-		Rv1813c	0.89	-0.2
2,056,169	+				-0.8
2,056,170	-				+0.5
2,056,208	+				+1.1
2,056,271	-				-1.5
2,056,351	+				-1.0
2,056,352	-				-0.3
2,056,352	-				-0.4
2,056,374	-				+0.3
2,056,382	+				-0.3
2,056,466	+				-0.1
2,056,466	+				-0.6
2,056,466	+				-0.5
2,056,558	+				-0.2
2,056,558	+				-0.1
2,056,558	+				+0.6
2,056,650	+		Rv1814	0.14	-0.3
2,056,650	+		Rv1814	0.14	-0.7
2,056,650	+		Rv1814	0.14	+0.8
2,056,651	-		Rv1814	0.14	+0.5
2,056,752	+		Rv1814	0.26	+0.0
2,056,752	+		Rv1814	0.26	-0.1
2,056,752	+		Rv1814	0.26	-0.3
2,056,752	+		Rv1814	0.26	+1.0
2,056,753	-		Rv1814	0.26	+1.7
2,056,753	-		Rv1814	0.26	-0.3
2,056,753	-		Rv1814	0.26	+0.2
2,056,758	+		Rv1814	0.26	+0.6
2,056,758	+		Rv1814	0.26	+0.7
2,056,759	-		Rv1814	0.26	-0.4
2,056,759	-		Rv1814	0.26	+0.3
2,056,833	+		Rv1814	0.35	+1.0
2,056,833	+		Rv1814	0.35	-0.4
2,056,834	-		Rv1814	0.35	+0.1
2,056,834	-		Rv1814	0.35	-0.7
2,056,836	+		Rv1814	0.35	+0.8
2,056,837	-		Rv1814	0.35	+0.2
2,056,837	-		Rv1814	0.35	+1.7
2,056,842	+		Rv1814	0.36	-0.8
2,056,843	-		Rv1814	0.36	+0.7
2,056,843	-		Rv1814	0.36	-1.8
2,056,909	-		Rv1814	0.43	-0.8
2,056,909	-		Rv1814	0.43	+0.7
2,057,037	+		Rv1814	0.57	-1.3
2,057,037	+		Rv1814	0.57	+0.9
2,057,103	-		Rv1814	0.64	-0.3
2,057,103	-		Rv1814	0.64	+1.7
2,057,146	-		Rv1814	0.69	+0.2
2,057,146	-		Rv1814	0.69	-0.0
2,057,146	-		Rv1814	0.69	-0.7
2,057,146	-		Rv1814	0.69	+0.0
2,057,160	+		Rv1814	0.71	-0.2
2,057,160	+		Rv1814	0.71	+0.7
2,057,215	+		Rv1814	0.77	+1.2
2,057,229	+		Rv1814	0.78	+0.0
2,057,230	-		Rv1814	0.79	-1.3
2,057,286	+		Rv1814	0.85	+0.3
2,057,286	+		Rv1814	0.85	-0.2
2,057,287	-		Rv1814	0.85	+2.1
2,057,287	-		Rv1814	0.85	-0.3
2,057,287	-		Rv1814	0.85	-0.1
2,057,287	-		Rv1814	0.85	-0.1
2,057,343	+				-1.1
2,057,343	+				+0.1
2,057,344	-				-0.7
2,057,344	-				-0.1
2,057,344	-				-1.0
2,057,384	+				+0.5
2,057,385	-				+0.1
2,057,449	-				-1.8
2,057,451	+				-2.0
2,057,467	+				-0.3
2,057,468	-				+0.2
2,057,673	-		Rv1815	0.22	-0.5
2,057,673	-		Rv1815	0.22	+1.0
2,057,673	-		Rv1815	0.22	-0.8
2,057,747	+		Rv1815	0.33	+1.7
2,058,056	+		Rv1815	0.79	+0.0
2,058,057	-		Rv1815	0.79	-1.0
2,058,191	+				-0.0
2,058,413	+		Rv1816	0.22	+0.4
2,058,414	-		Rv1816	0.22	-0.4
2,058,421	+		Rv1816	0.23	-0.8